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Nezar Abdennur
Nezar Abdennur
UMass Chan Medical School
Verified email at umassmed.edu
Title
Cited by
Cited by
Year
Formation of chromosomal domains by loop extrusion
G Fudenberg, M Imakaev, C Lu, A Goloborodko, N Abdennur, LA Mirny
Cell reports 15 (9), 2038-2049, 2016
17122016
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
EP Nora, A Goloborodko, AL Valton, JH Gibcus, A Uebersohn, ...
Cell 169 (5), 930-944. e22, 2017
14742017
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans
M Claussnitzer, SN Dankel, KH Kim, G Quon, W Meuleman, C Haugen, ...
New England Journal of Medicine 373 (10), 895-907, 2015
13992015
HiGlass: web-based visual exploration and analysis of genome interaction maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ...
Genome biology 19, 1-12, 2018
11392018
Two independent modes of chromatin organization revealed by cohesin removal
W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ...
Nature 551 (7678), 51-56, 2017
10292017
Cooler: scalable storage for Hi-C data and other genomically labeled arrays
N Abdennur, LA Mirny
Bioinformatics 36 (1), 311-316, 2020
8282020
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
IM Flyamer, J Gassler, M Imakaev, HB Brandão, SV Ulianov, N Abdennur, ...
Nature 544 (7648), 110-114, 2017
6822017
Chromatin organization by an interplay of loop extrusion and compartmental segregation
J Nuebler, G Fudenberg, M Imakaev, N Abdennur, L Mirny
Biophysical Journal 114 (3), 30a, 2018
5832018
Ultrastructural details of mammalian chromosome architecture
N Krietenstein, S Abraham, SV Venev, N Abdennur, J Gibcus, THS Hsieh, ...
Molecular cell 78 (3), 554-565. e7, 2020
3962020
Emerging evidence of chromosome folding by loop extrusion
G Fudenberg, N Abdennur, M Imakaev, A Goloborodko, LA Mirny
Cold Spring Harbor symposia on quantitative biology 82, 45-55, 2017
2682017
Two major mechanisms of chromosome organization
LA Mirny, M Imakaev, N Abdennur
Current opinion in cell biology 58, 142-152, 2019
1782019
Gene expression noise facilitates adaptation and drug resistance independently of mutation
DA Charlebois, N Abdennur, M Kaern
Physical review letters 107 (21), 218101, 2011
872011
Interaction of the N-and C-terminal autoregulatory domains of FRL2 does not inhibit FRL2 activity
DC Vaillant, SJ Copeland, C Davis, SF Thurston, N Abdennur, ...
Journal of biological chemistry 283 (48), 33750-33762, 2008
782008
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data
SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, L Mercado, S Lee, ...
Nature communications 13 (1), 2365, 2022
662022
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos
J Erceg, J AlHaj Abed, A Goloborodko, BR Lajoie, G Fudenberg, ...
Nature Communications 10 (1), 4486, 2019
502019
Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers
G Spracklin, N Abdennur, M Imakaev, N Chowdhury, S Pradhan, LA Mirny, ...
Nature structural & molecular biology 30 (1), 38-51, 2023
312023
Two independent modes of chromosome organization are revealed by cohesin removal
W Schwarzer, N Abdennur, A Goloborodko, A Pekowska, G Fudenberg, ...
bioRxiv, 094185, 2016
292016
Cooltools: enabling high-resolution Hi-C analysis in Python
Open2C, N Abdennur, S Abraham, G Fudenberg, IM Flyamer, ...
BioRxiv, 2022.10. 31.514564, 2022
262022
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure
SV Ulianov, AA Galitsyna, IM Flyamer, AK Golov, EE Khrameeva, ...
Epigenetics & Chromatin 10, 1-19, 2017
242017
HiGlass: web-based visual comparison and exploration of genome interaction maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ...
bioRxiv 2017, 1-7, 2017
212017
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