David Páez-Espino

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Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Natalia IvanovaDOE Joint Genome InstituteVerified email at lbl.gov
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Jennifer DoudnaProfessor of Molecular and Cell Biology and Chemistry, UC BerkeleyVerified email at berkeley.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteVerified email at lbl.gov
Georgios A. PavlopoulosDirector & Bioinformatics Research Professor @ BSRC Alexander Fleming // CEO BioInnovation GreeceVerified email at fleming.gr
David (Dudu) BursteinTel Aviv UniversityVerified email at tau.ac.il
Simon RouxDOE Joint Genome InstituteVerified email at lbl.gov
Víctor de Lorenzo (ORCID 0000-0002-...Professor of Research of the CSICVerified email at cnb.csic.es
Rekha SeshadriU.S. Department of Energy JGIVerified email at lbl.gov
Edward M RubinScience CorpsVerified email at science-corps.org
Frederik SchulzDOE Joint Genome InstituteVerified email at lbl.gov
Neha J VargheseDOE Joint Genome InstituteVerified email at lbl.gov
Gonzalo Durante-RodríguezStaff Researcher (CIB-CSIC)Verified email at cib.csic.es
Max Chavarría (ORCID: 0000-0001-59...1. Chemistry School & CIPRONA, Universidad de Costa Rica 2. CENIBiotVerified email at ucr.ac.cr
Brian C. ThomasCEO/Founder, Metagenomi.coVerified email at metagenomi.co
Rodolphe BarrangouNorth Carolina State UniversityVerified email at ncsu.edu
Rafael Silva RochaFounder and CTO at ByMyCellVerified email at bymycell.com
Esteban Martínez-GarcíaPostdoctoral ReseacherVerified email at cnb.csic.es
Joan Carles PonsAssociate professor, Balearic Islands UniversityVerified email at uib.es

David Páez-Espino

Ancilia Biosciences / Former: Mammoth Bio, JGI, UCB, CNB-CSIC

Verified email at anciliabio.com

microbiome virome CRISPR-Cas host-virus LBPs


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Uncovering Earth’s virome D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ... Nature 536 (7617), 425-430, 2016	1063	2016
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes LB Harrington, D Burstein, JS Chen, D Paez-Espino, E Ma, IP Witte, ... Science 362 (6416), 839-842, 2018	1034	2018
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ... Nucleic acids research 41 (D1), D666-D675, 2013	705	2013
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	680	2021
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	535	2019
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ... Nature biotechnology 36 (4), 359-367, 2018	525	2018
Microbial responses to environmental arsenic D Páez-Espino, J Tamames, V de Lorenzo, D Cánovas Biometals 22, 117-130, 2009	454	2009
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v. 4) M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ... Standards in genomic sciences 10, 1-6, 2015	429	2015
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome S Nayfach, D Páez-Espino, L Call, SJ Low, H Sberro, NN Ivanova, ... Nature microbiology 6 (7), 960-970, 2021	366	2021
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021	301	2021
Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020	289	2020
A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020	266	2020
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ... Nature biotechnology 35 (7), 676-683, 2017	265	2017
A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021	260	2021
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ... Nucleic acids research 45 (D1), gkw1030, 2016	221	2016
A thermostable Cas9 with increased lifetime in human plasma LB Harrington, D Paez-Espino, BT Staahl, JS Chen, E Ma, NC Kyrpides, ... Nature communications 8 (1), 1424, 2017	211	2017
Strong bias in the bacterial CRISPR elements that confer immunity to phage D Paez-Espino, W Morovic, CL Sun, BC Thomas, K Ueda, B Stahl, ... Nature communications 4 (1), 1430, 2013	206	2013
CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus D Paez-Espino, I Sharon, W Morovic, B Stahl, BC Thomas, R Barrangou, ... MBio 6 (2), 10.1128/mbio. 00262-15, 2015	181	2015
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 47 (D1), D678-D686, 2019	175	2019
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ... Nature communications 7 (1), 10476, 2016	163	2016

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