| CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units Y Liu, DL Maskell, B Schmidt BMC research notes 2, 1-10, 2009 | 360 | 2009 |
| Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data Y Liu, J Schröder, B Schmidt Bioinformatics 29 (3), 308-315, 2013 | 325 | 2013 |
| CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions Y Liu, A Wirawan, B Schmidt BMC bioinformatics 14, 1-10, 2013 | 295 | 2013 |
| MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities Y Liu, B Schmidt, DL Maskell Bioinformatics 26 (16), 1958-1964, 2010 | 279 | 2010 |
| CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions Y Liu, B Schmidt, DL Maskell BMC research notes 3, 1-12, 2010 | 265 | 2010 |
| Streaming algorithms for biological sequence alignment on GPUs W Liu, B Schmidt, G Voss, W Muller-Wittig IEEE transactions on parallel and distributed systems 18 (9), 1270-1281, 2007 | 234 | 2007 |
| CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform Y Liu, B Schmidt, DL Maskell Bioinformatics 28 (14), 1830-1837, 2012 | 219 | 2012 |
| SHREC: a short-read error correction method J Schröder, H Schröder, SJ Puglisi, R Sinha, B Schmidt Bioinformatics 25 (17), 2157-2163, 2009 | 211 | 2009 |
| Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA W Liu, B Schmidt, G Voss, W Müller-Wittig Computer physics communications 179 (9), 634-641, 2008 | 202 | 2008 |
| Bio-sequence database scanning on a GPU W Liu, B Schmidt, G Voss, A Schroder, W Muller-Wittig Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006 | 164 | 2006 |
| Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW T Oliver, B Schmidt, D Nathan, R Clemens, D Maskell Bioinformatics 21 (16), 3431-3432, 2005 | 154 | 2005 |
| Next-generation sequencing: big data meets high performance computing B Schmidt, A Hildebrandt Drug discovery today 22 (4), 712-717, 2017 | 148 | 2017 |
| Long read alignment based on maximal exact match seeds Y Liu, B Schmidt Bioinformatics 28 (18), i318-i324, 2012 | 136 | 2012 |
| Hyper customized processors for bio-sequence database scanning on FPGAs T Oliver, B Schmidt, D Maskell Proceedings of the 2005 ACM/SIGDA 13th international symposium on Field …, 2005 | 125 | 2005 |
| MSA-CUDA: multiple sequence alignment on graphics processing units with CUDA Y Liu, B Schmidt, DL Maskell 2009 20th IEEE International Conference on Application-specific Systems …, 2009 | 115 | 2009 |
| Reconfigurable architectures for bio-sequence database scanning on FPGAs TF Oliver, B Schmidt, DL Maskell IEEE Transactions on Circuits and Systems II: Express Briefs 52 (12), 851-855, 2005 | 112 | 2005 |
| CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware W Liu, B Schmidt, W Muller-Wittig IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011 | 109 | 2011 |
| Parallelized short read assembly of large genomes using de Bruijn graphs Y Liu, B Schmidt, DL Maskell BMC bioinformatics 12, 1-10, 2011 | 106 | 2011 |
| CUDA–MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units Y Liu, B Schmidt, W Liu, DL Maskell Pattern Recognition Letters 31 (14), 2170-2177, 2010 | 97 | 2010 |
| Molecular dynamics simulations on commodity GPUs with CUDA W Liu, B Schmidt, G Voss, W Müller-Wittig High Performance Computing–HiPC 2007: 14th International Conference, Goa …, 2007 | 94 | 2007 |
