Glenn Hickey
Glenn Hickey
Arenaria Inc.
Verified email at
Cited by
Cited by
The UCSC genome browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 2014
The Genome 10K Project: A Way Forward
KP Koepfli, B Paten, the Genome 10K Community of Scientists, ...
Annual Review of Animal Biosciences 3, 57-111, 2015
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
SPR Distance Computation for Unrooted Trees
G Hickey, F Dehne, A Rau-Chaplin, C Blouin
Evolutionary Bioinformatics 4, EBO. S419, 2008
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
HAL: a hierarchical format for storing and analyzing multiple genome alignments
G Hickey, B Paten, D Earl, D Zerbino, D Haussler
Bioinformatics 29 (10), 1341-1342, 2013
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6 (1), 1-9, 2015
Building a pan-genome reference for a population
N Nguyen, G Hickey, DR Zerbino, B Raney, D Earl, J Armstrong, WJ Kent, ...
Journal of Computational Biology 22 (5), 387-401, 2015
Superbubbles, ultrabubbles, and cacti
B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey
Journal of Computational Biology 25 (7), 649-663, 2018
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
bioRxiv, 101378, 2017
Genotyping structural variants in pangenome graphs using the vg toolkit
G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ...
Genome biology 21 (1), 1-17, 2020
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ...
Genome research 27 (5), 686-696, 2017
Comparative Assembly Hubs: Web Accessible Browsers for Comparative Genomics
N Nguyen, G Hickey, BJ Raney, J Armstrong, H Clawson, A Zweig, J Kent, ...
Bioinformatics 30 (23), 3293-301, 2014
Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era
J Armstrong, G Hickey, M Diekhans, A Deran, Q Fang, D Xie, S Feng, ...
bioRxiv, 730531, 2019
Sequence variation aware genome references and read mapping with the variation graph toolkit
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
BioRxiv, 234856, 2017
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual Review of Genomics and Human Genetics 21, 139-162, 2020
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, ...
Nature 587 (7833), 246-251, 2020
A unifying model of genome evolution under parsimony
B Paten, D Zerbino, G Hickey, D Haussler
BMC Bioinformatics 15 (206), 2014
Sequence tube maps: making graph genomes intuitive to commuters
W Beyer, AM Novak, G Hickey, J Chan, V Tan, B Paten, DR Zerbino
Bioinformatics 35 (24), 5318, 2019
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