Samuel L. Hong
Samuel L. Hong
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Salmonella enterica Serotype 4,[5],12:i:- in Swine in the United States Midwest: An Emerging Multidrug-Resistant Clade
E Elnekave, S Hong, AE Mather, D Boxrud, AJ Taylor, V Lappi, ...
Clinical Infectious Diseases 66 (6), 877-885, 2018
Serotypes and Antimicrobial Resistance in Salmonella enterica Recovered from Clinical Samples from Cattle and Swine in Minnesota, 2006 to 2015
S Hong, A Rovira, P Davies, C Ahlstrom, P Muellner, A Rendahl, K Olsen, ...
PloS one 11 (12), e0168016, 2016
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2
P Lemey, SL Hong, V Hill, G Baele, C Poletto, V Colizza, ┴ O’toole, ...
Nature communications 11 (1), 1-14, 2020
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages. bioRxiv. 2020
S Dellicour, K Durkin, S Hong, B Vanmechelen, J MartÝ-Carreras, M Gill
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Snapshot of the evolution and mutation patterns of SARS-CoV-2
J Zhao, J Sun, WT He, X Ji, Q Gao, X Zhai, MA Suchard, SL Hong, ...
bioRxiv, 2020
Circulation of Plasmids Harboring Resistance Genes to Quinolones and/or Extended-Spectrum Cephalosporins in Multiple Salmonella enterica Serotypes fromá…
E Elnekave, SL Hong, S Lim, SS Hayer, D Boxrud, AJ Taylor, V Lappi, ...
Antimicrobial agents and chemotherapy 63 (4), e02602-18, 2019
Inferring source attribution from a multiyear multisource data set of Salmonella in Minnesota
C Ahlstrom, P Muellner, SEF Spencer, S Hong, A Saupe, A Rovira, ...
Zoonoses and public health 64 (8), 589-598, 2017
In search of covariates of HIV-1 subtype B spread in the United States—A cautionary tale of large-scale Bayesian phylogeography
SL Hong, S Dellicour, B Vrancken, MA Suchard, MT Pyne, DR Hillyard, ...
Viruses 12 (2), 182, 2020
SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data
P Lemey, N Ruktanonchai, S Hong, V Colizza, C Poletto, ...
Travel-driven emergence and spread of SARS-CoV-2 lineage B. 1.620 with multiple VOC-like mutations and deletions in Europe
G Dudas, SL Hong, B Potter, S Calvignac-Spencer, FS Niatou-Singa, ...
medRxiv, 2021
Genomic Sequencing of SARS-COV-2 in Rwanda: evolution and regional dynamics
Y Butera, E Mukantwari, M Artesi, JDA Umuringa, ┴N O’Toole, V Hill, ...
medRxiv, 2021
Transmission of Multidrug-Resistant Salmonella enterica Subspecies enterica 4,[5], 12: i:-Sequence Type 34 between Europe and the United States
E Elnekave, SL Hong, S Lim, D Boxrud, A Rovira, AE Mather, A Perez, ...
Emerging infectious diseases 26 (12), 3034, 2020
Genetic determinants of resistance to extended-spectrum cephalosporin and fluoroquinolone in Escherichia coli isolated from diseased pigs in the United States
SS Hayer, S Lim, S Hong, E Elnekave, T Johnson, A Rovira, F Vannucci, ...
Msphere 5 (5), e00990-20, 2020
Untangling introductions and persistence in COVID-19 resurgence in Europe
P Lemey, N Ruktanonchai, SL Hong, V Colizza, C Poletto, ...
Nature, 1-8, 2021
Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City
S Dellicour, SL Hong, B Vrancken, A Chaillon, MS Gill, MT Maurano, ...
PLoS pathogens 17 (5), e1009571, 2021
Bayesian Phylogeographic Analysis Incorporating Predictors and Individual Travel Histories in BEAST
SL Hong, P Lemey, MA Suchard, G Baele
Current Protocols 1 (4), e98, 2021
Comparing serotyping with whole-genome sequencing for subtyping of non-typhoidal Salmonella enterica: a large-scale analysis of 37 serotypes with a public health impact in the USA
E Elnekave, SL Hong, S Lim, TJ Johnson, A Perez, J Alvarez
Microbial genomics 6 (9), 2020
Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations
JP Pirnay, P Selhorst, SL Hong, C Cochez, B Potter, P Maes, M Petrillo, ...
Viruses 13 (7), 1359, 2021
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