Roberto Vera Alvarez, PhD
Roberto Vera Alvarez, PhD
National Center for Biotechnology Information
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
BioContainers: An open-source and community-driven framework for software standardization
Bioinformatics, 10.1093/bioinformatics/btx192, 2017
133*2017
Census of solo LuxR genes in prokaryotic genomes
S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ...
Frontiers in cellular and infection microbiology 5, 20, 2015
582015
ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes
I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ...
PloS one 9 (5), e96122, 2014
412014
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
322019
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
322019
In silico analysis of accurate proteomics, complemented by selective isolation of peptides
Y Perez-Riverol, A Sánchez, Y Ramos, A Schmidt, M Müller, L Betancourt, ...
Journal of proteomics 74 (10), 2071-2082, 2011
322011
Chemical compounds having antiviral activity against dengue virus and other flaviviruses
YM Reyes, GC Santiago, OG Cruz, RV Alvarez, VH Galindo, NF Salazar, ...
US Patent 8,722,742, 2014
222014
Chemical Compounds Having Antiviral Activity against Dengue Virus and Other Flaviviruses
Y MAZOLA REYES, G CHINEA SANTIAGO, O GUIROLA CRUZ, ...
WO Patent 2,009,106,019, 2009
22*2009
LitSense: making sense of biomedical literature at sentence level
A Allot, Q Chen, S Kim, R Vera Alvarez, DC Comeau, WJ Wilbur, Z Lu
Nucleic acids research 47 (W1), W594-W599, 2019
202019
COG database update: focus on microbial diversity, model organisms, and widespread pathogens
MY Galperin, YI Wolf, KS Makarova, R Vera Alvarez, D Landsman, ...
Nucleic Acids Research 49 (D1), D274-D281, 2021
192021
Quantifying deleterious effects of regulatory variants
S Li, R Vera Alvarez, R Sharan, D Landsman, I Ovcharenko
Nucleic Acids Research, 1-8, 2016
152016
JBioWH: an open-source Java framework for bioinformatics data integration
R Vera, Y Perez-Riverol, S Perez, B Ligeti, A Kertesz-Farkas, S Pongor
Database 2013, 2013
152013
A network-based target overlap score for characterizing drug combinations: high correlation with cancer clinical trial results
B Ligeti, Z Penzvalto, R Vera, B Győrffy, S Pongor
PloS one 10 (6), e0129267, 2015
122015
A Parallel Systematic-Monte Carlo Algorithm for Exploring Conformational Space
Y Perez-Riverol, R Vera, Y Mazola, A Musacchio
Current topics in medicinal chemistry 12 (16), 1790-1796, 2012
122012
Evaluation of Phenylthiocarbamoyl-Derivatized Peptides by Electrospray Ionization Mass Spectrometry: Selective Isolation and Analysis of Modified Multiply Charged Peptides for …
A Sanchez, Y Perez-Riverol, LJ González, J Noda, L Betancourt, ...
Analytical chemistry 82 (20), 8492-8501, 2010
122010
MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions
N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ...
Iscience 23 (3), 100939, 2020
112020
Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006
RM Gamez, F Rodríguez, NM Vidal, S Ramirez, RV Alvarez, D Landsman, ...
BMC genomics 20 (1), 1-20, 2019
102019
Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification
LS Pongor, R Vera, B Ligeti
PloS one 9 (7), e103441, 2014
102014
Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification
LS Pongor, R Vera, B Ligeti
PLOS One 9 (7), e103441, 2014
102014
PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra
A Kertész-Farkas, B Reiz, R Vera, MP Myers, S Pongor
Bioinformatics 30 (2), 234-241, 2014
92014
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Articles 1–20