| Fuelling the future: microbial engineering for the production of sustainable biofuels JC Liao, L Mi, S Pontrelli, S Luo Nature Reviews Microbiology 14 (5), 288-304, 2016 | 645 | 2016 |
| Escherichia coli as a host for metabolic engineering S Pontrelli, TY Chiu, EI Lan, FYH Chen, P Chang, JC Liao Metabolic engineering 50, 16-46, 2018 | 356 | 2018 |
| Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli T Ohtake, S Pontrelli, WA Laviņa, JC Liao, SP Putri, E Fukusaki Metabolic engineering 41, 135-143, 2017 | 99 | 2017 |
| A distinct growth physiology enhances bacterial growth under rapid nutrient fluctuations J Nguyen, V Fernandez, S Pontrelli, U Sauer, M Ackermann, R Stocker Nature Communications 12 (1), 3662, 2021 | 57 | 2021 |
| Metabolic cross-feeding structures the assembly of polysaccharide degrading communities S Pontrelli, R Szabo, S Pollak, J Schwartzman, D Ledezma-Tejeida, ... Science advances 8 (8), eabk3076, 2022 | 54* | 2022 |
| Sustainable biorefining in wastewater by engineered extreme alkaliphile Bacillus marmarensis DG Wernick, SP Pontrelli, AW Pollock, JC Liao Scientific reports 6 (1), 20224, 2016 | 46 | 2016 |
| Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance K Amarnath, AV Narla, S Pontrelli, J Dong, J Reddan, BR Taylor, T Caglar, ... Nature communications 14 (1), 3165, 2023 | 37* | 2023 |
| Orthogonal partial least squares/projections to latent structures regression-based metabolomics approach for identification of gene targets for improvement of 1-butanol … K Nitta, WA Laviņa, S Pontrelli, JC Liao, SP Putri, E Fukusaki Journal of bioscience and bioengineering 124 (5), 498-505, 2017 | 30 | 2017 |
| Directed strain evolution restructures metabolism for 1-butanol production in minimal media S Pontrelli, RCB Fricke, SSM Sakurai, SP Putri, S Fitz-Gibbon, M Chung, ... Metabolic engineering 49, 153-163, 2018 | 29 | 2018 |
| Historical contingencies and phage induction diversify bacterioplankton communities at the microscale RE Szabo, S Pontrelli, J Grilli, JA Schwartzman, S Pollak, U Sauer, ... Proceedings of the National Academy of Sciences 119 (30), e2117748119, 2022 | 27* | 2022 |
| Metabolic repair through emergence of new pathways in Escherichia coli S Pontrelli, RCB Fricke, ST Teoh, WA Laviņa, SP Putri, S Fitz-Gibbon, ... Nature chemical biology 14 (11), 1005-1009, 2018 | 25 | 2018 |
| microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data S Zuffa, R Schmid, A Bauermeister, PW P. Gomes, ... Nature Microbiology 9 (2), 336-345, 2024 | 21 | 2024 |
| Metabolome analysis revealed the knockout of glyoxylate shunt as an effective strategy for improvement of 1-butanol production in transgenic Escherichia coli K Nitta, WA Laviņa, S Pontrelli, JC Liao, SP Putri, E Fukusaki Journal of bioscience and bioengineering 127 (3), 301-308, 2019 | 21 | 2019 |
| Salt-tolerant metabolomics for exometabolomic measurements of marine bacterial isolates S Pontrelli, U Sauer Analytical Chemistry 93 (19), 7164-7171, 2021 | 10 | 2021 |
| Strong chemotaxis by marine bacteria towards polysaccharides is enhanced by the abundant organosulfur compound DMSP EE Clerc, JB Raina, JM Keegstra, Z Landry, S Pontrelli, U Alcolombri, ... Nature Communications 14 (1), 8080, 2023 | 9 | 2023 |
| A taxonomically-informed mass spectrometry search tool for microbial metabolomics data S Zuffa, R Schmid, A Bauermeister, PWP Gomes, ... Research Square, 2023 | 8 | 2023 |
| Building a queer-and trans-inclusive microbiology conference R Gregor, J Johnston, LSY Coe, N Evans, D Forsythe, R Jones, ... Msystems 8 (5), e00433-23, 2023 | 5 | 2023 |
| Metabolomics Analysis Reveals Global Metabolic Changes in the Evolved E. coli Strain with Improved Growth and 1-Butanol Production in Minimal Medium WA Laviņa, SSM Sakurai, S Pontrelli, SP Putri, E Fukusaki Metabolites 10 (5), 192, 2020 | 5 | 2020 |
| Metabolomics-driven identification of the rate-limiting steps in 1-propanol production T Ohtake, N Kawase, S Pontrelli, K Nitta, WA Laviņa, CR Shen, SP Putri, ... Frontiers in microbiology 13, 871624, 2022 | 4 | 2022 |
| Identifying metabolic elements that contribute to productivity of 1-propanol bioproduction using metabolomic analysis SP Putri, Y Nakayama, C Shen, S Noguchi, K Nitta, T Bamba, S Pontrelli, ... Metabolomics 14, 1-14, 2018 | 3 | 2018 |
