Richard Bonneau
Title
Cited by
Cited by
Year
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
13982012
Tweeting from left to right: Is online political communication more than an echo chamber?
P Barberá, JT Jost, J Nagler, JA Tucker, R Bonneau
Psychological science 26 (10), 1531-1542, 2015
10682015
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
AG Baltz, M Munschauer, B Schwanhäusser, A Vasile, Y Murakawa, ...
Molecular cell 46 (5), 674-690, 2012
9842012
A validated regulatory network for Th17 cell specification
M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ...
Cell 151 (2), 289-303, 2012
9082012
Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome
EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ...
Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010
7532010
Ab initio protein structure prediction of CASP III targets using ROSETTA
KT Simons, R Bonneau, I Ruczinski, D Baker
Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999
6491999
Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS Comput Biol 11 (5), e1004226, 2015
6012015
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7 (5), 1-16, 2006
5712006
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
4992017
Structural bioinformatics
J Gu, PE Bourne
John Wiley & Sons, 2009
4672009
Ab initio protein structure prediction: progress and prospects
R Bonneau, D Baker
Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001
4112001
Rosetta in CASP4: progress in ab initio protein structure prediction
R Bonneau, J Tsai, I Ruczinski, D Chivian, C Rohl, CEM Strauss, D Baker
Proteins: Structure, Function, and Bioinformatics 45 (S5), 119-126, 2001
3762001
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses
T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ...
Cell 163 (2), 381-393, 2015
3682015
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3602004
Automated prediction of CASP‐5 structures using the Robetta server
D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003
3322003
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3222007
De novo prediction of three-dimensional structures for major protein families
R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ...
Journal of molecular biology 322 (1), 65-78, 2002
3152002
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7 (1), 1-22, 2006
2972006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2822016
ICOS-based chimeric antigen receptors program bipolar TH17/TH1 cells
S Guedan, X Chen, A Madar, C Carpenito, SE McGettigan, MJ Frigault, ...
Blood 124 (7), 1070-1080, 2014
2762014
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