Ming Hu
Ming Hu
Assistant Staff, Department of Quantitative Health Sciences, Cleveland Clinic Foundation
Verified email at ccf.org - Homepage
Title
Cited by
Cited by
Year
Topological domains in mammalian genomes identified by analysis of chromatin interactions
JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren
Nature 485 (7398), 376-380, 2012
50602012
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression
NR Wray, S Ripke, M Mattheisen, M Trzaskowski, EM Byrne, A Abdellaoui, ...
Nature genetics 50 (5), 668-681, 2018
14072018
An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression
J Yu, J Yu, RS Mani, Q Cao, CJ Brenner, X Cao, X Wang, L Wu
Cancer cell 17 (5), 443-454, 2010
8702010
A compendium of chromatin contact maps reveals spatially active regions in the human genome
AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li, S Lin, Y Lin, CL Barr, ...
Cell reports 17 (8), 2042-2059, 2016
5412016
Genome-wide mapping and analysis of chromosome architecture
AD Schmitt, M Hu, B Ren
Nature reviews Molecular cell biology 17 (12), 743-755, 2016
2952016
Integrative functional genomic analysis of human brain development and neuropsychiatric risks
M Li, G Santpere, YI Kawasawa, OV Evgrafov, FO Gulden, S Pochareddy, ...
Science 362 (6420), 2018
2942018
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Y Wang, F Song, B Zhang, L Zhang, J Xu, D Kuang, D Li, MNK Choudhary, ...
Genome biology 19 (1), 1-12, 2018
2762018
Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing
L Li, X Lyu, C Hou, N Takenaka, HQ Nguyen, CT Ong, C Cubeņas-Potts, ...
Molecular cell 58 (2), 216-231, 2015
2552015
HiCNorm: removing biases in Hi-C data via Poisson regression
M Hu, K Deng, S Selvaraj, Z Qin, B Ren, JS Liu
Bioinformatics 28 (23), 3131-3133, 2012
2422012
Bayesian Inference of Spatial Organizations of Chromosomes
M Hu, K Deng, Z Qin, J Dixon, S Selvaraj, J Fang, B Ren, JS Liu
PLoS computational biology 9 (1), e1002893, 2013
2162013
Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
JH Kim, SM Dhanasekaran, JR Prensner, X Cao, D Robinson, ...
Genome research 21 (7), 1028-1041, 2011
1882011
Emergency Department–Initiated Palliative Care in Advanced Cancer: A Randomized Clinical Trial
CR Grudzen, LD Richardson, PN Johnson, M Hu, B Wang, JM Ortiz, ...
JAMA Oncology, 2016
1592016
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data
Z Qin, J Yu, J Shen, C Maher, M Hu, S Kalyana-Sundaram, J Yu, ...
BMC bioinformatics 11 (1), 369, 2010
1402010
On the detection and refinement of transcription factor binding sites using ChIP-Seq data
M Hu, J Yu, JMG Taylor, AM Chinnaiyan, ZS Qin
Nucleic acids research 38 (7), 2154-2167, 2010
1232010
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
1142019
Cooperation between Polycomb and androgen receptor during oncogenic transformation
JC Zhao, J Yu, C Runkle, L Wu, M Hu, D Wu, JS Liu, Q Wang, ZS Qin, ...
Genome Research 22 (2), 322-331, 2012
1142012
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers
J Yan, SAA Chen, A Local, T Liu, Y Qiu, KM Dorighi, S Preissl, CM Rivera, ...
Cell research 28 (2), 204-220, 2018
1022018
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Y Zhang, L An, J Xu, B Zhang, WJ Zheng, M Hu, J Tang, F Yue
Nature communications 9 (1), 1-9, 2018
872018
An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome
C Zhu, M Yu, H Huang, I Juric, A Abnousi, R Hu, J Lucero, MM Behrens, ...
Nature structural & molecular biology 26 (11), 1063-1070, 2019
772019
HUGIn: Hi-C unifying genomic interrogator
JS Martin, Z Xu, AP Reiner, KL Mohlke, P Sullivan, B Ren, M Hu, Y Li
Bioinformatics 33 (23), 3793-3795, 2017
552017
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