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Syma Khalid
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Coarse-grained molecular dynamics simulations of membrane proteins and peptides
PJ Bond, J Holyoake, A Ivetac, S Khalid, MSP Sansom
Journal of structural biology 157 (3), 593-605, 2007
3802007
Electroporation of the E. coli and S. aureus membranes: molecular dynamics simulations of complex bacterial membranes
TJ Piggot, DA Holdbrook, S Khalid
The journal of physical chemistry B 115 (45), 13381-13388, 2011
2602011
Coarse-grained MD simulations of membrane protein-bilayer self-assembly
KA Scott, PJ Bond, A Ivetac, AP Chetwynd, S Khalid, MSP Sansom
Structure 16 (4), 621-630, 2008
2302008
Intramolecular DNA coiling mediated by metallo-supramolecular cylinders: differential binding of P and M helical enantiomers
I Meistermann, V Moreno, MJ Prieto, E Moldrheim, E Sletten, S Khalid, ...
Proceedings of the National Academy of Sciences 99 (8), 5069-5074, 2002
2262002
Molecular dynamics simulations of phosphatidylcholine membranes: a comparative force field study
TJ Piggot, A Pineiro, S Khalid
Journal of chemical theory and computation 8 (11), 4593-4609, 2012
2202012
Membrane protein structure, function, and dynamics: a perspective from experiments and theory
Z Cournia, TW Allen, I Andricioaei, B Antonny, D Baum, G Brannigan, ...
The Journal of membrane biology 248, 611-640, 2015
2192015
Outer membrane protein G: Engineering a quiet pore for biosensing
M Chen, S Khalid, MSP Sansom, H Bayley
Proceedings of the National Academy of Sciences 105 (17), 6272-6277, 2008
2132008
Protein assemblies ejected directly from native membranes yield complexes for mass spectrometry
DS Chorev, LA Baker, D Wu, V Beilsten-Edmands, SL Rouse, ...
Science 362 (6416), 829-834, 2018
1762018
Interaction of the Antimicrobial Peptide Polymyxin B1 with Both Membranes of E. coli: A Molecular Dynamics Study
NA Berglund, TJ Piggot, D Jefferies, RB Sessions, PJ Bond, S Khalid
PLoS computational biology 11 (4), e1004180, 2015
1702015
CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides
PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ...
Journal of computational chemistry 38 (27), 2354-2363, 2017
1612017
Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity
DJ Huggins, PC Biggin, MA Dämgen, JW Essex, SA Harris, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (3), e1393, 2019
1512019
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics
L Casalino, AC Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ...
The International Journal of High Performance Computing Applications 35 (5 …, 2021
1502021
An accurate in vitro model of the E. coli envelope
LA Clifton, SA Holt, AV Hughes, EL Daulton, W Arunmanee, F Heinrich, ...
Angewandte Chemie International Edition 54 (41), 11952-11955, 2015
1332015
Combining native and ‘omics’ mass spectrometry to identify endogenous ligands bound to membrane proteins
J Gault, I Liko, M Landreh, D Shutin, JR Bolla, D Jefferies, M Agasid, ...
Nature methods 17 (5), 505-508, 2020
1312020
Single-stranded DNA within nanopores: conformational dynamics and implications for sequencing; a molecular dynamics simulation study
AT Guy, TJ Piggot, S Khalid
Biophysical journal 103 (5), 1028-1036, 2012
1222012
OmpA: a flexible clamp for bacterial cell wall attachment
F Samsudin, ML Ortiz-Suarez, TJ Piggot, PJ Bond, S Khalid
Structure 24 (12), 2227-2235, 2016
992016
Membrane recognition and dynamics of the RNA degradosome
H Strahl, C Turlan, S Khalid, PJ Bond, JM Kebalo, P Peyron, L Poljak, ...
PLoS genetics 11 (2), e1004961, 2015
962015
Self-assembly of a simple membrane protein: coarse-grained molecular dynamics simulations of the influenza M2 channel
T Carpenter, PJ Bond, S Khalid, MSP Sansom
Biophysical Journal 95 (8), 3790-3801, 2008
892008
A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion
A Kurze, KA Michie, SE Dixon, A Mishra, T Itoh, S Khalid, L Strmecki, ...
The EMBO journal 30 (2), 364-378, 2011
862011
DNA and lipid bilayers: self-assembly and insertion
S Khalid, PJ Bond, J Holyoake, RW Hawtin, MSP Sansom
Journal of the Royal Society Interface 5 (suppl_3), 241-250, 2008
842008
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Articles 1–20