| One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions N Nagano, CA Orengo, JM Thornton Journal of molecular biology 321 (5), 741-765, 2002 | 769 | 2002 |
| Strong hydrophobic nature of cysteine residues in proteins N Nagano, M Ota, K Nishikawa FEBS letters 458 (1), 69-71, 1999 | 192 | 1999 |
| Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus M Umemura, N Nagano, H Koike, J Kawano, T Ishii, Y Miyamura, ... Fungal Genetics and Biology 68, 23-30, 2014 | 140 | 2014 |
| Motif-based searching in TOPS protein topology databases. D Gilbert, D Westhead, N Nagano, J Thornton Bioinformatics (Oxford, England) 15 (4), 317-326, 1999 | 123 | 1999 |
| MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data M Umemura, H Koike, N Nagano, T Ishii, J Kawano, N Yamane, I Kozone, ... PloS one 8 (12), e84028, 2013 | 113 | 2013 |
| Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels N Nagano, EG Hutchinson, JM Thornton Protein Science 8 (10), 2072-2084, 1999 | 110 | 1999 |
| Class of cyclic ribosomal peptide synthetic genes in filamentous fungi N Nagano, M Umemura, M Izumikawa, J Kawano, T Ishii, M Kikuchi, ... Fungal Genetics and Biology 86, 58-70, 2016 | 94 | 2016 |
| Unveiling the biosynthetic pathway of the ribosomally synthesized and post‐translationally modified peptide ustiloxin B in filamentous fungi Y Ye, A Minami, Y Igarashi, M Izumikawa, M Umemura, N Nagano, ... Angewandte Chemie 128 (28), 8204-8207, 2016 | 89 | 2016 |
| EzCatDB: the enzyme catalytic-mechanism database N Nagano Nucleic acids research 33 (suppl_1), D407-D412, 2005 | 82 | 2005 |
| Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens T Tsukui, N Nagano, M Umemura, T Kumagai, G Terai, M Machida, K Asai Bioinformatics 31 (7), 981-985, 2015 | 69 | 2015 |
| The (βα)8 glycosidases: sequence and structure analyses suggest distant evolutionary relationships N Nagano, CT Porter, JM Thornton Protein Engineering 14 (11), 845-855, 2001 | 61 | 2001 |
| Prediction of detailed enzyme functions and identification of specificity determining residues by random forests C Nagao, N Nagano, K Mizuguchi PloS one 9 (1), e84623, 2014 | 47 | 2014 |
| Metric learning for enzyme active-site search T Kato, N Nagano Bioinformatics 26 (21), 2698-2704, 2010 | 35 | 2010 |
| Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae A Yoshimi, M Umemura, N Nagano, H Koike, M Machida, K Abe AMB Express 6, 1-8, 2016 | 28 | 2016 |
| EzCatDB: the enzyme reaction database, 2015 update N Nagano, N Nakayama, K Ikeda, M Fukuie, K Yokota, T Doi, T Kato, ... Nucleic acids research 43 (D1), D453-D458, 2015 | 25 | 2015 |
| Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database N Nagano, T Noguchi, Y Akiyama Proteins: Structure, Function, and Bioinformatics 66 (1), 147-159, 2007 | 24 | 2007 |
| Key challenges for the creation and maintenance of specialist protein resources GL Holliday, A Bairoch, PG Bagos, A Chatonnet, DJ Craik, RD Finn, ... Proteins: Structure, Function, and Bioinformatics 83 (6), 1005-1013, 2015 | 17 | 2015 |
| SAHG, a comprehensive database of predicted structures of all human proteins C Motono, J Nakata, R Koike, K Shimizu, M Shirota, T Amemiya, K Tomii, ... Nucleic acids research 39 (suppl_1), D487-D493, 2011 | 14 | 2011 |
| Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat PC Babbitt, PG Bagos, A Bairoch, A Bateman, A Chatonnet, MJ Chen, ... Database 2015, bav063, 2015 | 10 | 2015 |
| Relationships between functional subclasses and information contained in active‐site and ligand‐binding residues in diverse superfamilies C Nagao, N Nagano, K Mizuguchi Proteins: Structure, Function, and Bioinformatics 78 (10), 2369-2384, 2010 | 8 | 2010 |
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
