Benjamin J. Blencowe
Benjamin J. Blencowe
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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe
Nature genetics 40 (12), 1413-1415, 2008
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
V Tripathi, JD Ellis, Z Shen, DY Song, Q Pan, AT Watt, SM Freier, ...
Molecular cell 39 (6), 925-938, 2010
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
I Voineagu, X Wang, P Johnston, JK Lowe, Y Tian, S Horvath, J Mill, ...
Nature 474 (7351), 380-384, 2011
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172-177, 2013
The human splicing code reveals new insights into the genetic determinants of disease
HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ...
Science 347 (6218), 1254806, 2015
Alternative splicing: new insights from global analyses
BJ Blencowe
Cell 126 (1), 37-47, 2006
Regulation of alternative splicing by histone modifications
RF Luco, Q Pan, K Tominaga, BJ Blencowe, OM Pereira-Smith, T Misteli
Science 327 (5968), 996-1000, 2010
The evolutionary landscape of alternative splicing in vertebrate species
NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ...
Science 338 (6114), 1587-1593, 2012
Deciphering the splicing code
Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai, BJ Blencowe, ...
Nature 465 (7294), 53-59, 2010
Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases
BJ Blencowe
Trends in biochemical sciences 25 (3), 106-110, 2000
Widespread intron retention in mammals functionally tunes transcriptomes
U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ...
Genome research 24 (11), 1774-1786, 2014
An RNA map predicting Nova-dependent splicing regulation
J Ule, G Stefani, A Mele, M Ruggiu, X Wang, B Taneri, T Gaasterland, ...
Nature 444 (7119), 580-586, 2006
Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism
NN Parikshak, V Swarup, TG Belgard, M Irimia, G Ramaswami, ...
Nature 540 (7633), 423-427, 2016
A highly conserved program of neuronal microexons is misregulated in autistic brains
M Irimia, RJ Weatheritt, JD Ellis, NN Parikshak, ...
Cell 159 (7), 1511-1523, 2014
Alternative splicing regulatory networks: functions, mechanisms, and evolution
J Ule, BJ Blencowe
Molecular cell 76 (2), 329-345, 2019
Most “dark matter” transcripts are associated with known genes
H Van Bakel, C Nislow, BJ Blencowe, TR Hughes
PLoS biology 8 (5), e1000371, 2010
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
D Ray, H Kazan, ET Chan, LP Castillo, S Chaudhry, S Talukder, ...
Nature biotechnology 27 (7), 667-670, 2009
Probing microRNAs with microarrays: tissue specificity and functional inference
T Babak, WEN Zhang, Q Morris, BJ Blencowe, TR Hughes
Rna 10 (11), 1813-1819, 2004
Dynamic integration of splicing within gene regulatory pathways
U Braunschweig, S Gueroussov, AM Plocik, BR Graveley, BJ Blencowe
Cell 152 (6), 1252-1269, 2013
Using expression profiling data to identify human microRNA targets
JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ...
Nature methods 4 (12), 1045-1049, 2007
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