Gail Rosen
Gail Rosen
Professor of ECE, Drexel University
Verified email at - Homepage
Cited by
Cited by
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the royal society interface 15 (141), 20170387, 2018
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta‐analysis
KE Sullam, SD Essinger, CA Lozupone, MP O’CONNOR, GL Rosen, ...
Molecular ecology 21 (13), 3363-3378, 2012
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18, 1-19, 2017
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads
GL Rosen, ER Reichenberger, AM Rosenfeld
Bioinformatics 27 (1), 127, 2011
Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
Y Lan, Q Wang, JR Cole, GL Rosen
PLoS one 7 (3), e32491, 2012
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Emerging priorities for microbiome research
CM Cullen, KK Aneja, S Beyhan, CE Cho, S Woloszynek, M Convertino, ...
Frontiers in microbiology 11, 491374, 2020
Metagenome fragment classification using N-mer frequency profiles
G Rosen, E Garbarine, D Caseiro, R Polikar, B Sokhansanj
Advances in Bioinformatics 2008, 2008
Multi-layer and recursive neural networks for metagenomic classification
G Ditzler, R Polikar, G Rosen
IEEE transactions on nanobioscience 14 (6), 608-616, 2015
Prokaryotic nucleotide composition is shaped by both phylogeny and the environment
ER Reichenberger, G Rosen, U Hershberg, R Hershberg
Genome biology and evolution 7 (5), 1380-1389, 2015
Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains
Y Lan, G Rosen, R Hershberg
Microbiome 4, 1-13, 2016
Nanopore sequencing in microgravity
ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin, ...
npj Microgravity 2 (1), 1-9, 2016
Examining coding structure and redundancy in DNA
G Rosen
Engineering in Medicine and Biology Magazine, IEEE 25 (1), 62-68, 2006
Combining gene prediction methods to improve metagenomic gene annotation
N Yok, G Rosen
BMC bioinformatics 12 (1), 20, 2011
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing
D Koslicki, S Foucart, G Rosen
Bioinformatics 29 (17), 2096-2102, 2013
Selecting age-related functional characteristics in the human gut microbiome
Y Lan, A Kriete, GL Rosen
Microbiome 1, 1-12, 2013
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization
Z Zhao, BA Sokhansanj, C Malhotra, K Zheng, GL Rosen
PLoS computational biology 16 (9), e1008269, 2020
Fizzy: feature subset selection for metagenomics
G Ditzler, JC Morrison, Y Lan, GL Rosen
BMC bioinformatics 16, 1-8, 2015
WGSQuikr: fast whole-genome shotgun metagenomic classification
D Koslicki, S Foucart, G Rosen
PloS one 9 (3), e91784, 2014
Signal processing for biologically-inspired gradient source localization and DNA sequence analysis
GL Rosen
Georgia Institute of Technology, 2006
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