| Independent SE (3)-Equivariant Models for End-to-End Rigid Protein Docking OE Ganea, X Huang, C Bunne, Y Bian, R Barzilay, T Jaakkola, A Krause International Conference on Learning Representations (ICLR) 10, 2022 | 159 | 2022 |
| Learning Graph Models for Retrosynthesis Prediction VR Somnath, C Bunne, CW Coley, A Krause, R Barzilay Neural Information Processing Systems (NeurIPS) 34, 2021 | 130* | 2021 |
| Learning Generative Models across Incomparable Spaces C Bunne, D Alvarez-Melis, A Krause, S Jegelka International Conference on Machine Learning (ICML) 97, 2019 | 117 | 2019 |
| Machine intelligence for chemical reaction space P Schwaller, AC Vaucher, R Laplaza, C Bunne, A Krause, C Corminboeuf, ... Wiley Interdisciplinary Reviews: Computational Molecular Science 12 (5), e1604, 2022 | 108* | 2022 |
| Proximal Optimal Transport Modeling of Population Dynamics C Bunne, L Meng-Papaxanthos, A Krause, M Cuturi International Conference on Artificial Intelligence and Statistics (AISTATS) 25, 2022 | 89 | 2022 |
| Multi-Scale Representation Learning on Proteins VR Somnath, C Bunne, A Krause Neural Information Processing Systems (NeurIPS) 34, 2021 | 84 | 2021 |
| Learning Single-Cell Perturbation Responses using Neural Optimal Transport C Bunne, S Stark, G Gut, JS del Castillo, M Levesque, K Van Lehmann, ... Nature Methods, 2023 | 82 | 2023 |
| Optimal Transport Tools (OTT): A JAX Toolbox for all things Wasserstein M Cuturi, L Meng-Papaxanthos, Y Tian, C Bunne, G Davis, O Teboul arXiv preprint arXiv:2201.12324, 2022 | 66 | 2022 |
| Supervised Training of Conditional Monge Maps C Bunne, A Krause, M Cuturi Neural Information Processing Systems (NeurIPS) 35, 2022 | 60 | 2022 |
| Aligned Diffusion Schrödinger Bridges VR Somnath, M Pariset, YP Hsieh, MR Martinez, A Krause, C Bunne Uncertainty in Artificial Intelligence (UAI), 2023 | 42 | 2023 |
| The Schrödinger Bridge between Gaussian Measures has a Closed Form C Bunne, YP Hsieh, M Cuturi, A Krause International Conference on Artificial Intelligence and Statistics (AISTATS …, 2023 | 41* | 2023 |
| Invariant Causal Mechanisms through Distribution Matching M Chevalley, C Bunne, A Krause, S Bauer arXiv preprint arXiv:2206.11646, 2022 | 28 | 2022 |
| Backbone circularization of Bacillus subtilis family 11 xylanase increases its thermostability and its resistance against aggregation MC Waldhauer, SN Schmitz, C Ahlmann-Eltze, JG Gleixner, CC Schmelas, ... Molecular BioSystems 11 (12), 3231-3243, 2015 | 26 | 2015 |
| Neural Unbalanced Optimal Transport via Cycle-Consistent Semi-Couplings F Lübeck, C Bunne, G Gut, JS del Castillo, L Pelkmans, D Alvarez-Melis arXiv preprint arXiv:2209.15621, 2022 | 17 | 2022 |
| Studying Invariances of Trained Convolutional Neural Networks C Bunne, L Rahmann, T Wolf arXiv preprint arXiv:1803.05963, 2018 | 11 | 2018 |
| Reproducible image-based profiling with Pycytominer E Serrano, SN Chandrasekaran, D Bunten, KI Brewer, J Tomkinson, ... arXiv preprint arXiv:2311.13417, 2023 | 10 | 2023 |
| COSIFER: a Python package for the consensus inference of molecular interaction networks M Manica, C Bunne, R Mathis, J Cadow, ME Ahsen, GA Stolovitzky, ... Bioinformatics 37 (14), 2070-2072, 2021 | 8 | 2021 |
| Unbalanced Diffusion Schrödinger Bridge M Pariset, YP Hsieh, C Bunne, A Krause, V De Bortoli arXiv preprint arXiv:2306.09099, 2023 | 5 | 2023 |
| Transition Path Sampling with Boltzmann Generator-based MCMC Moves M Plainer, H Stärk, C Bunne, S Günnemann arXiv preprint arXiv:2312.05340, 2023 | 4 | 2023 |
| Exponential Growth of Glioblastoma In Vivo Driven by Rapidly Dividing and Outwardly Migrating Cancer Stem Cells L Buchauer, MA Khan, Y Zhuo, C Shao, P Zou, W Feng, M Qian, G Bekki, ... BioRxiv, 723601, 2019 | 4 | 2019 |
Andreas KrauseProfessor of Computer Science, ETH ZurichVerified email at inf.ethz.ch
