Matthew Oberhardt
Matthew Oberhardt
Program Director for Research Science, NewYork-Presbyterian Hospital
Verified email at nyp.org - Homepage
Title
Cited by
Cited by
Year
Applications of genome‐scale metabolic reconstructions
MA Oberhardt, Bě Palsson, JA Papin
Molecular systems biology 5 (1), 320, 2009
8822009
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ...
PLoS computational biology 4 (10), e1000210, 2008
2832008
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin
Journal of bacteriology 190 (8), 2790-2803, 2008
2762008
Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis
MA Oberhardt, J Puchałka, VAP Martins dos Santos, JA Papin
PLoS computational biology 7 (3), e1001116, 2011
1302011
Predicting biological system objectives de novo from internal state measurements
EP Gianchandani, MA Oberhardt, AP Burgard, CD Maranas, JA Papin
BMC bioinformatics 9 (1), 1-13, 2008
1272008
Harnessing the landscape of microbial culture media to predict new organism–media pairings
MA Oberhardt, R Zarecki, S Gronow, E Lang, HP Klenk, U Gophna, ...
Nature communications 6 (1), 1-14, 2015
972015
Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection
MA Oberhardt, JB Goldberg, M Hogardt, JA Papin
Journal of bacteriology 192 (20), 5534-5548, 2010
912010
Flux balance analysis: interrogating genome-scale metabolic networks
MA Oberhardt, AK Chavali, JA Papin
Systems Biology, 61-80, 2009
682009
Metabolic network prediction of drug side effects
I Shaked, MA Oberhardt, N Atias, R Sharan, E Ruppin
Cell systems 2 (3), 209-213, 2016
622016
Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior
SH Robertson, CK Smith, AL Langhans, SE McLinden, MA Oberhardt, ...
BMC systems biology 1 (1), 1-15, 2007
412007
Metabolically re-modeling the drug pipeline
MA Oberhardt, K Yizhak, E Ruppin
Current opinion in pharmacology 13 (5), 778-785, 2013
372013
Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations
O Eilam, R Zarecki, M Oberhardt, LK Ursell, M Kupiec, R Knight, ...
MBio 5 (4), e01526-14, 2014
362014
Seasonality and clinical impact of human parainfluenza viruses
P Maykowski, M Smithgall, P Zachariah, M Oberhardt, C Vargas, C Reed, ...
Influenza and other respiratory viruses 12 (6), 706-716, 2018
262018
A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness
R Zarecki, MA Oberhardt, L Reshef, U Gophna, E Ruppin
PLoS computational biology 10 (7), e1003726, 2014
252014
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli
MA Oberhardt, R Zarecki, L Reshef, F Xia, M Duran-Frigola, R Schreiber, ...
PLoS computational biology 12 (1), e1004705, 2016
212016
Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms
R Zarecki, MA Oberhardt, K Yizhak, A Wagner, E Shtifman Segal, ...
PloS one 9 (5), e98372, 2014
142014
Palsson B0, Papin JA (2009) Applications of genome-scale metabolic reconstructions
M Oberhardt
Molecular systems biology 5 (320), 320, 0
14
Systems analysis of small signaling modules relevant to eight human diseases
KF Benedict, F Mac Gabhann, RK Amanfu, AK Chavali, EP Gianchandani, ...
Annals of biomedical engineering 39 (2), 621-635, 2011
122011
Data-driven metabolic pathway compositions enhance cancer survival prediction
N Auslander, A Wagner, M Oberhardt, E Ruppin
PLoS computational biology 12 (9), e1005125, 2016
112016
Genome-scale modeling and human disease: an overview
MA Oberhardt, EP Gianchandani
Frontiers in physiology 5, 527, 2015
102015
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Articles 1–20