Matthew Oberhardt
Matthew Oberhardt
Program Director for Research Science, NewYork-Presbyterian Hospital
Verified email at - Homepage
Cited by
Cited by
Applications of genome‐scale metabolic reconstructions
MA Oberhardt, Bě Palsson, JA Papin
Molecular systems biology 5 (1), 320, 2009
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin
Journal of bacteriology 190 (8), 2790-2803, 2008
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ...
PLoS computational biology 4 (10), e1000210, 2008
Harnessing the landscape of microbial culture media to predict new organism–media pairings
MA Oberhardt, R Zarecki, S Gronow, E Lang, HP Klenk, U Gophna, ...
Nature communications 6 (1), 8493, 2015
Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis
MA Oberhardt, J Puchałka, VAP Martins dos Santos, JA Papin
PLoS computational biology 7 (3), e1001116, 2011
Predicting biological system objectives de novo from internal state measurements
EP Gianchandani, MA Oberhardt, AP Burgard, CD Maranas, JA Papin
BMC bioinformatics 9, 1-13, 2008
Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection
MA Oberhardt, JB Goldberg, M Hogardt, JA Papin
Journal of bacteriology 192 (20), 5534-5548, 2010
Metabolic network prediction of drug side effects
I Shaked, MA Oberhardt, N Atias, R Sharan, E Ruppin
Cell systems 2 (3), 209-213, 2016
Flux balance analysis: interrogating genome-scale metabolic networks
MA Oberhardt, AK Chavali, JA Papin
Systems Biology, 61-80, 2009
Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations
O Eilam, R Zarecki, M Oberhardt, LK Ursell, M Kupiec, R Knight, ...
MBio 5 (4), 10.1128/mbio. 01526-14, 2014
Seasonality and clinical impact of human parainfluenza viruses
P Maykowski, M Smithgall, P Zachariah, M Oberhardt, C Vargas, C Reed, ...
Influenza and other respiratory viruses 12 (6), 706-716, 2018
Metabolically re-modeling the drug pipeline
MA Oberhardt, K Yizhak, E Ruppin
Current opinion in pharmacology 13 (5), 778-785, 2013
Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior
SH Robertson, CK Smith, AL Langhans, SE McLinden, MA Oberhardt, ...
BMC systems biology 1, 1-15, 2007
A novel nutritional predictor links microbial fastidiousness with lowered ubiquity, growth rate, and cooperativeness
R Zarecki, MA Oberhardt, L Reshef, U Gophna, E Ruppin
PLoS computational biology 10 (7), e1003726, 2014
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli
MA Oberhardt, R Zarecki, L Reshef, F Xia, M Duran-Frigola, R Schreiber, ...
PLoS computational biology 12 (1), e1004705, 2016
Epidemiology, clinical features, and resource utilization associated with respiratory syncytial virus in the community and hospital
M Smithgall, P Maykowski, P Zachariah, M Oberhardt, CY Vargas, C Reed, ...
Influenza and other respiratory viruses 14 (3), 247-256, 2020
Comparative incidence and burden of respiratory viruses associated with hospitalization in adults in New York City
WD Sieling, CR Goldman, M Oberhardt, M Phillips, L Finelli, L Saiman
Influenza and Other Respiratory Viruses 15 (5), 670-677, 2021
Palsson B0, Papin JA (2009) Applications of genome-scale metabolic reconstructions
M Oberhardt
Molecular systems biology 5 (320), 320, 0
A framework for improving characterization of obstetric hemorrhage using informatics data
D Goffman, AM Friedman, JJ Sheen, A Kessler, D Vawdrey, R Green, ...
Obstetrics & Gynecology 134 (6), 1317-1325, 2019
Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms
R Zarecki, MA Oberhardt, K Yizhak, A Wagner, E Shtifman Segal, ...
PloS one 9 (5), e98372, 2014
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