| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 10504 | 2012 |
| A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 2451 | 2012 |
| Inferring correlation networks from genomic survey data J Friedman, EJ Alm Public Library of Science 8 (9), e1002687, 2012 | 2203 | 2012 |
| Host lifestyle affects human microbiota on daily timescales LA David, AC Materna, J Friedman, MI Campos-Baptista, MC Blackburn, ... Genome biology 15, 1-15, 2014 | 1026 | 2014 |
| Ecology drives a global network of gene exchange connecting the human microbiome CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm Nature 480 (7376), 241-244, 2011 | 985 | 2011 |
| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ... The ISME journal 10 (7), 1669-1681, 2016 | 703 | 2016 |
| Population genomics of early events in the ecological differentiation of bacteria BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ... science 336 (6077), 48-51, 2012 | 553 | 2012 |
| Community structure follows simple assembly rules in microbial microcosms J Friedman, LM Higgins, J Gore Nature ecology & evolution 1 (5), 0109, 2017 | 517 | 2017 |
| Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ... Cell host & microbe 23 (2), 229-240. e5, 2018 | 356 | 2018 |
| Universality of human microbial dynamics A Bashan, TE Gibson, J Friedman, VJ Carey, ST Weiss, EL Hohmann, ... Nature 534 (7606), 259-262, 2016 | 269 | 2016 |
| Massively parallel screening of synthetic microbial communities J Kehe, A Kulesa, A Ortiz, CM Ackerman, SG Thakku, D Sellers, S Kuehn, ... Proceedings of the National Academy of Sciences 116 (26), 12804-12809, 2019 | 231 | 2019 |
| Deciphering functional redundancy in the human microbiome L Tian, XW Wang, AK Wu, Y Fan, J Friedman, A Dahlin, MK Waldor, ... Nature communications 11 (1), 6217, 2020 | 195 | 2020 |
| Mapping the ecological networks of microbial communities Y Xiao, MT Angulo, J Friedman, MK Waldor, ST Weiss, YY Liu Nature communications 8 (1), 2042, 2017 | 175 | 2017 |
| Positive interactions are common among culturable bacteria J Kehe, A Ortiz, A Kulesa, J Gore, PC Blainey, J Friedman Science advances 7 (45), eabi7159, 2021 | 172 | 2021 |
| Core gut microbial communities are maintained by beneficial interactions and strain variability in fish F Kokou, G Sasson, J Friedman, S Eyal, O Ovadia, S Harpaz, A Cnaani, ... Nature microbiology 4 (12), 2456-2465, 2019 | 128 | 2019 |
| Looking for Darwin's footprints in the microbial world BJ Shapiro, LA David, J Friedman, EJ Alm Trends in microbiology 17 (5), 196-204, 2009 | 95 | 2009 |
| Mortality causes universal changes in microbial community composition CI Abreu, J Friedman, VL Andersen Woltz, J Gore Nature communications 10 (1), 2120, 2019 | 88 | 2019 |
| Ecological systems biology: The dynamics of interacting populations J Friedman, J Gore Current Opinion in Systems Biology 1, 114-121, 2017 | 75 | 2017 |
| Computational methods for high-throughput comparative analyses of natural microbial communities SP Preheim, AR Perrotta, J Friedman, C Smilie, I Brito, MB Smith, E Alm Methods in enzymology 531, 353-370, 2013 | 71 | 2013 |
| Cyanobacterial diversity and activity in modern conical microbialites T Bosak, B Liang, TD Wu, SP Templer, A Evans, H Vali, JL Guerquin‐Kern, ... Geobiology 10 (5), 384-401, 2012 | 65 | 2012 |
Eric AlmProfessor of Biological Engineering, MITVerified email at mit.edu
