| Bgee: integrating and comparing heterogeneous transcriptome data among species F Bastian, G Parmentier, J Roux, S Moretti, V Laudet, ... Data Integration in the Life Sciences, 124-131, 2008 | 218 | 2008 |
| The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ... Nucleic Acids Research 49 (D1), D831-D847, 2021 | 183 | 2021 |
| Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon MA Haendel, JP Balhoff, FB Bastian, DC Blackburn, JA Blake, Y Bradford, ... Journal of biomedical semantics 5, 1-13, 2014 | 160 | 2014 |
| Data integration in the life sciences F Bastian, G Parmentier, J Roux, S Moretti, V Laudet, ... Lecture Notes in Computer Science, 124-131, 2008 | 53 | 2008 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 52 | 2016 |
| OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data HM Dingerdissen, F Bastian, K Vijay-Shanker, M Robinson-Rechavi, ... JCO clinical cancer informatics 4, 210-220, 2020 | 48 | 2020 |
| The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ... Database 2015, bav043, 2015 | 43 | 2015 |
| BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests A Komljenovic, J Roux, J Wollbrett, M Robinson-Rechavi, FB Bastian F1000Research, 2018 | 36 | 2018 |
| Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support H Stockinger, AM Altenhoff, K Arnold, A Bairoch, F Bastian, S Bergmann, ... Nucleic acids research 42 (W1), W436-W441, 2014 | 20 | 2014 |
| Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy G Parmentier, FB Bastian, M Robinson-Rechavi Bioinformatics 26 (14), 1766-1771, 2010 | 19 | 2010 |
| vHOG, a multispecies vertebrate ontology of homologous organs groups A Niknejad, A Comte, G Parmentier, J Roux, FB Bastian, ... Bioinformatics 28 (7), 1017-1020, 2012 | 17 | 2012 |
| Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference P Gaudet, C Arighi, F Bastian, A Bateman, JA Blake, MJ Cherry, ... Database 2012, bas036, 2012 | 14 | 2012 |
| Uncovering hidden duplicated content in public transcriptomics data M Rosikiewicz, A Comte, A Niknejad, M Robinson-Rechavi, FB Bastian Database 2013, bat010, 2013 | 13 | 2013 |
| Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience T Mendes de Farias, J Wollbrett, M Robinson-Rechavi, F Bastian GigaScience 12, giad058, 2023 | 6 | 2023 |
| The SIB Swiss Institute of Bioinformatics Semantic Web of data Nucleic Acids Research 52 (D1), D44-D51, 2024 | 4 | 2024 |
| Exploring Disease Model Mouse Using Knowledge Graphs: Combining Gene Expression, Orthology, and Disease Datasets T Kushida, T Mendes de Farias, AC Sima, C Dessimoz, H Chiba, ... bioRxiv, 2023.08. 30.555283, 2023 | 4 | 2023 |
| Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools FB Bastian, AB Cammarata, S Carsanaro, H Detering, WT Huang, S Joye, ... Nucleic acids research 53 (D1), D878-D885, 2025 | 3 | 2025 |
| Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets T Mendes de Farias, T Kushida, AC Sima, C Dessimoz, H Chiba, ... SWAT4HCLS 2023: The 14th International Conference on Semantic Web …, 2023 | 2 | 2023 |
| The Expression Comparison Tool in Bgee M Robinson-Rechavi, VR Laval, FB Bastian, J Wollbrett, T Bgee Phylogenetics in the Genomic Era, 2020 | 2 | 2020 |
| Robust inference of expression state in bulk and single-cell RNA-Seq using curated intergenic regions SSF Costa, M Rosikiewicz, J Roux, J Wollbrett, FB Bastian, ... bioRxiv, 2022.03. 31.486555, 2022 | 1 | 2022 |
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
