Simon Kasif
Simon Kasif
Professor of Biomedical Engineering, Computer Science and Bioinformatics, Boston University
Verified email at - Homepage
Cited by
Cited by
Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Macmillan Publishers Ltd., 2001
Improved microbial gene identification with GLIMMER
AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
Nucleic acids research 27 (23), 4636-4641, 1999
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ...
PLoS biology 5 (1), e8, 2007
Microbial gene identification using interpolated Markov models
SL Salzberg, AL Delcher, S Kasif, O White
Nucleic acids research 26 (2), 544-548, 1998
Alignment of whole genomes
AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg
Nucleic acids research 27 (11), 2369-2376, 1999
A system for induction of oblique decision trees
SK Murthy, S Kasif, S Salzberg
Journal of artificial intelligence research 2, 1-32, 1994
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells
ML Suvą, E Rheinbay, SM Gillespie, AP Patel, H Wakimoto, SD Rabkin, ...
Cell 157 (3), 580-594, 2014
Extracting conserved gene expression motifs from gene expression data
TM Murali, S Kasif
Biocomputing 2003, 77-88, 2002
Predicting protein function from protein/protein interaction data: a probabilistic approach
S Letovsky, S Kasif
Bioinformatics 19 (suppl_1), i197-i204, 2003
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ...
PloS one 7 (6), e37919, 2012
Whole-genome annotation by using evidence integration in functional-linkage networks
U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004
models for biological sequences
SL Salzberg, DB Searls, S Kasif
Computational methods in molecular biology, 45, 1998
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma
E Rheinbay, ML Suvą, SM Gillespie, H Wakimoto, AP Patel, M Shahid, ...
Cell reports 3 (5), 1567-1579, 2013
Oc1: A randomized induction of oblique decision trees
S Murthy, S Kasif, S Salzberg, R Beigel
AAAI 93 (2), 322-327, 1993
RankGene: identification of diagnostic genes based on expression data
Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif
Bioinformatics 19 (12), 1578-1579, 2003
Network-based analysis of affected biological processes in type 2 diabetes models
M Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, S Kasif
PLoS genetics 3 (6), e96, 2007
Computational methods in molecular biology
SL Salzberg, DB Searls, S Kasif
Elsevier, 1998
On the parallel complexity of discrete relaxation in constraint satisfaction networks
S Kasif
Artificial Intelligence 45 (3), 275-286, 1990
Induction of oblique decision trees
D Heath, S Kasif, S Salzberg
IJCAI 1993, 1002-1007, 1993
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