| Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env Y Do Kwon, M Pancera, P Acharya, IS Georgiev, ET Crooks, J Gorman, ... Nature structural & molecular biology 22 (7), 522-531, 2015 | 376 | 2015 |
| Dead‐end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility MA Hallen, DA Keedy, BR Donald Proteins: Structure, Function, and Bioinformatics 81 (1), 18-39, 2013 | 104 | 2013 |
| OSPREY 3.0: Open‐source protein redesign for you, with powerful new features MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ... Journal of computational chemistry 39 (30), 2494-2507, 2018 | 70 | 2018 |
| Mass spectrometry-and lysine amidination-based protocol for thermodynamic analysis of protein folding and ligand binding interactions Y Xu, IN Falk, MA Hallen, MC Fitzgerald Analytical chemistry 83 (9), 3555-3562, 2011 | 39 | 2011 |
| Fluorescence recovery kinetic analysis of γ-tubulin binding to the mitotic spindle MA Hallen, J Ho, CD Yankel, SA Endow Biophysical Journal 95 (6), 3048-3058, 2008 | 39 | 2008 |
| Ncd motor binding and transport in the spindle MA Hallen, ZY Liang, SA Endow Journal of cell science 121 (22), 3834-3841, 2008 | 32 | 2008 |
| comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and … MA Hallen, BR Donald Journal of Computational Biology 23 (5), 311-321, 2016 | 28 | 2016 |
| A microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes J Zou, MA Hallen, CD Yankel, SA Endow The Journal of Cell Biology 180 (3), 459-466, 2008 | 26 | 2008 |
| Compact representation of continuous energy surfaces for more efficient protein design MA Hallen, P Gainza, BR Donald Journal of chemical theory and computation 11 (5), 2292-2306, 2015 | 23 | 2015 |
| Protein design by provable algorithms MA Hallen, BR Donald Communications of the ACM 62 (10), 76-84, 2019 | 22 | 2019 |
| LUTE (Local Unpruned Tuple Expansion): Accurate continuously flexible protein design with general energy functions and rigid-rotamer-like efficiency MA Hallen, JD Jou, BR Donald Biophysical Journal 112 (3), 194a, 2017 | 22 | 2017 |
| Mature Drosophila meiosis I spindles comprise microtubules of mixed polarity ZY Liang, MA Hallen, SA Endow Current Biology 19 (2), 163-168, 2009 | 21 | 2009 |
| CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions MA Hallen, BR Donald Bioinformatics 33 (14), i5-i12, 2017 | 20 | 2017 |
| Computation of steady-state probability distributions in stochastic models of cellular networks M Hallen, B Li, Y Tanouchi, C Tan, M West, L You PLoS Computational Biology 7 (10), e1002209, 2011 | 20 | 2011 |
| Fast gap‐free enumeration of conformations and sequences for protein design KE Roberts, P Gainza, MA Hallen, BR Donald Proteins: Structure, Function, and Bioinformatics 83 (10), 1859-1877, 2015 | 19 | 2015 |
| Two-state displacement by the kinesin-14 Ncd stalk MA Hallen, ZY Liang, SA Endow Biophysical chemistry 154 (2-3), 56-65, 2011 | 18 | 2011 |
| Expanding the scope of quantitative FRAP analysis MA Hallen, AT Layton Journal of Theoretical Biology 262 (2), 295-305, 2010 | 16 | 2010 |
| Synthesis of carboxylic acid monolayers by ozonolysis of 10-undecenyltrichlorosilane SAMs MA Hallen, HD Hallen The Journal of Physical Chemistry C 112 (6), 2086-2090, 2008 | 14 | 2008 |
| Anastral spindle assembly: a mathematical model MA Hallen, SA Endow Biophysical journal 97 (8), 2191-2201, 2009 | 13 | 2009 |
| Anastral spindle assembly and γ-tubulin in Drosophila oocytes SA Endow, MA Hallen BMC cell biology 12, 1-11, 2011 | 12 | 2011 |
