Björn Usadel
Björn Usadel
Professor of Biological Data Science,Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich
Verified email at fz-juelich.de - Homepage
Title
Cited by
Cited by
Year
Trimmomatic: a flexible trimmer for Illumina sequence data
AM Bolger, M Lohse, B Usadel
Bioinformatics 30 (15), 2114-2120, 2014
200352014
GMD@ CSB. DB: the Golm metabolome database
J Kopka, N Schauer, S Krueger, C Birkemeyer, B Usadel, E Bergmüller, ...
Bioinformatics 21 (8), 1635-1638, 2005
11752005
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
M Lohse, AM Bolger, A Nagel, AR Fernie, JE Lunn, M Stitt, B Usadel
Nucleic acids research 40 (W1), W622-W627, 2012
7492012
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis
OE Bläsing, Y Gibon, M Günther, M Höhne, R Morcuende, D Osuna, ...
The Plant Cell 17 (12), 3257-3281, 2005
6782005
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
B Usadel, A Nagel, O Thimm, H Redestig, OE Blaesing, N Palacios-Rojas, ...
Plant physiology 138 (3), 1195-1204, 2005
5912005
Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus
R Morcuende, R Bari, Y Gibon, W Zheng, BD PANT, O BLÄSING, ...
Plant, Cell & Environment 30 (1), 85-112, 2007
4702007
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic …
F Carrari, C Baxter, B Usadel, E Urbanczyk-Wochniak, MI Zanor, ...
Plant Physiology 142 (4), 1380-1396, 2006
4522006
Starch as a major integrator in the regulation of plant growth
R Sulpice, ET Pyl, H Ishihara, S Trenkamp, M Steinfath, H Witucka-Wall, ...
Proceedings of the National Academy of Sciences 106 (25), 10348-10353, 2009
4432009
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
B Usadel, F Poree, A Nagel, M Lohse, A CZEDIK‐EYSENBERG, M Stitt
Plant, cell & environment 32 (9), 1211-1229, 2009
4382009
Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
B USADEL, T OBAYASHI, M MUTWIL, FM GIORGI, GW BASSEL, ...
Plant, Cell & Environment 32 (12), 1633-1651, 2009
4362009
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
M Lohse, A Nagel, T Herter, P May, M Schroda, R Zrenner, T Tohge, ...
Plant, cell & environment 37 (5), 1250-1258, 2014
3592014
Quantitation in mass-spectrometry-based proteomics
WX Schulze, B Usadel
Annual Review of Plant Biology 61, 491-516, 2010
3302010
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
B Usadel, A Nagel, D Steinhauser, Y Gibon, O Bläsing, H Redestig, ...
BMC bioinformatics 7 (1), 535, 2006
3222006
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
Y Gibon, B Usadel, OE Blaesing, B Kamlage, M Hoehne, R Trethewey, ...
Genome Biology 7 (8), R76, 2006
3222006
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes
B Usadel, OE Bläsing, Y Gibon, K Retzlaff, M Höhne, M Günther, M Stitt
Plant Physiology 146 (4), 1834-1861, 2008
3062008
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ...
Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013
2972013
Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon‐deprived Arabidopsis seedlings
D Osuna, B Usadel, R Morcuende, Y Gibon, OE Bläsing, M Höhne, ...
The Plant Journal 49 (3), 463-491, 2007
2882007
Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis
G Doehlemann, R Wahl, RJ Horst, LM Voll, B Usadel, F Poree, M Stitt, ...
The Plant Journal 56 (2), 181-195, 2008
2812008
The genome of the stress-tolerant wild tomato species Solanum pennellii
A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, ...
Nature genetics 46 (9), 1034-1038, 2014
2712014
Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools
N Sreenivasulu, B Usadel, A Winter, V Radchuk, U Scholz, N Stein, ...
Plant physiology 146 (4), 1738-1758, 2008
2702008
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