| FEAST: fast expectation-maximization for microbial source tracking L Shenhav, M Thompson, TA Joseph, L Briscoe, O Furman, D Bogumil, ... Nature methods 16 (7), 627-632, 2019 | 321 | 2019 |
| Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for … P Estrada-de Los Santos, M Palmer, B Chávez-Ramírez, C Beukes, ... Genes 9 (8), 389, 2018 | 202 | 2018 |
| Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes SE De Meyer, L Briscoe, P Martínez-Hidalgo, CM Agapakis, ... Molecular Plant-Microbe Interactions 29 (8), 609-619, 2016 | 57 | 2016 |
| Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis I Mandric, T Schwarz, A Majumdar, K Hou, L Briscoe, R Perez, ... Nature communications 11 (1), 5504, 2020 | 48 | 2020 |
| Modeling the temporal dynamics of the gut microbial community in adults and infants L Shenhav, O Furman, L Briscoe, M Thompson, JD Silverman, I Mizrahi, ... PLoS computational biology 15 (6), e1006960, 2019 | 48 | 2019 |
| SaVanT: a web-based tool for the sample-level visualization of molecular signatures in gene expression profiles D Lopez, D Montoya, M Ambrose, L Lam, L Briscoe, C Adams, RL Modlin, ... BMC genomics 18, 1-9, 2017 | 40 | 2017 |
| Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress S Mukhtar, AM Hirsch, N Khan, KA Malik, EA Humm, M Pellegrini, B Shi, ... Phytobiomes Journal 4 (4), 364-374, 2020 | 19 | 2020 |
| The effect of gastric acid suppression on probiotic colonization in a double blinded randomized clinical trial G Singh, Y Haileselassie, L Briscoe, L Bai, A Patel, E Sanjines, S Hendler, ... Clinical Nutrition ESPEN 47, 70-77, 2022 | 16 | 2022 |
| Whole genome analyses suggests that Burkholderia sensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the … P Estrada-de Los Santos, M Palmer, B Chávez-Ramírez, C Beukes, ... | 11 | 2018 |
| Whole genome analyses suggests that Burkholderia sensu lato contains two additional novel genera P Estrada-de Los Santos, M Palmer, B Chávez-Ramírez, C Beukes, ... Mycetohabitans gen. nov, 2018 | 7 | 2018 |
| Evaluating supervised and unsupervised background noise correction in human gut microbiome data L Briscoe, B Balliu, S Sankararaman, E Halperin, NR Garud PLoS computational biology 18 (2), e1009838, 2022 | 6 | 2022 |
| SNV-FEAST: microbial source tracking with single nucleotide variants L Briscoe, E Halperin, NR Garud Genome biology 24 (1), 101, 2023 | 2 | 2023 |
| Microbiome source tracking using single nucleotide variants L Briscoe, E Halperin, NR Garud bioRxiv, 2022.05. 28.493810, 2022 | 1 | 2022 |
| Computational approaches for metagenomic analysis of the microbiome LP Briscoe University of California, Los Angeles, 2023 | | 2023 |
| Correcting for Background Noise Improves Phenotype Prediction from Human Gut Microbiome Data L Briscoe, B Balliu, S Sankararaman, E Halperin, NR Garud bioRxiv, 2021.03. 19.436199, 2021 | | 2021 |
| Clinical Nutrition ESPEN G Singh, Y Haileselassie, L Briscoe, L Bai, A Patel, E Sanjines, S Hendler, ... | | 2021 |
