Jenny Chen
Jenny Chen
Harvard Data Science Fellow
Verified email at fas.harvard.edu
Title
Cited by
Cited by
Year
Local regulation of gene expression by lncRNA promoters, transcription and splicing
JM Engreitz, JE Haines, EM Perez, G Munson, J Chen, M Kane, ...
Nature 539 (7629), 452-455, 2016
7262016
Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens
A Dixit, O Parnas, B Li, J Chen, CP Fulco, L Jerby-Arnon, ND Marjanovic, ...
Cell 167 (7), 1853-1866. e17, 2016
6712016
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming
G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ...
Cell 176 (4), 928-943. e22, 2019
261*2019
Simultaneous generation of many RNA-seq libraries in a single reaction
AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ...
Nature methods 12 (4), 323-325, 2015
1762015
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability
M Munschauer, CT Nguyen, K Sirokman, CR Hartigan, L Hogstrom, ...
Nature 561 (7721), 132-136, 2018
1482018
Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs
J Chen, AA Shishkin, X Zhu, S Kadri, I Maza, M Guttman, JH Hanna, ...
Genome biology 17 (1), 1-17, 2016
1082016
Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape
JG Camp, CL Frank, CR Lickwar, H Guturu, T Rube, AM Wenger, J Chen, ...
Genome research 24 (9), 1504-1516, 2014
902014
Changes in nucleosome occupancy associated with metabolic alterations in aged mammalian liver
IM Bochkis, D Przybylski, J Chen, A Regev
Cell reports 9 (3), 996-1006, 2014
542014
PRISM offers a comprehensive genomic approach to transcription factor function prediction
AM Wenger, SL Clarke, H Guturu, J Chen, BT Schaar, CY McLean, ...
Genome Research, 2013
382013
A quantitative framework for characterizing the evolutionary history of mammalian gene expression
J Chen, R Swofford, J Johnson, BB Cummings, N Rogel, K Lindblad-Toh, ...
Genome research 29 (1), 53-63, 2019
352019
Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection
CJ Ye, J Chen, AC Villani, M Subramaniam, RE Gate, T Bhangale, ...
Genome Research 28 (12), 1812-1825, 2018
312018
Automated discovery of tissue-targeting enhancers and transcription factors from binding motif and gene function data
G Tuteja, KB Moreira, T Chung, J Chen, AM Wenger, G Bejerano
PLoS Comput Biol 10 (1), e1003449, 2014
82014
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Articles 1–12