| Benchmarking of alignment-free sequence comparison methods A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ... Genome biology 20, 1-18, 2019 | 186 | 2019 |
| Microbial dark matter investigations: how microbial studies transform biological knowledge and empirically sketch a logic of scientific discovery G Bernard, JS Pathmanathan, R Lannes, P Lopez, E Bapteste Genome biology and evolution 10 (3), 707-715, 2018 | 111 | 2018 |
| Inferring phylogenies of evolving sequences without multiple sequence alignment CX Chan, G Bernard, O Poirion, JM Hogan, MA Ragan Scientific reports 4, 6504, 2014 | 85 | 2014 |
| Alignment-free inference of hierarchical and reticulate phylogenomic relationships G Bernard, CX Chan, Y Chan, XY Chua, Y Cong, JM Hogan, ... Briefings in Bioinformatics 20 (2), 426-435, 2019 | 78 | 2019 |
| Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer G Bernard, CX Chan, MA Ragan Scientific reports 6 (1), 28970, 2016 | 60 | 2016 |
| k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank G Bernard, P Greenfield, MA Ragan, CX Chan Msystems 3 (6), 10.1128/msystems. 00257-18, 2018 | 25 | 2018 |
| Recapitulating phylogenies using k-mers: from trees to networks G Bernard, MA Ragan, CX Chan F1000Research 5 (2789), 2016 | 20 | 2016 |
| Molecular phylogenetics before sequences: Oligonucleotide catalogs as k-mer spectra MA Ragan, G Bernard, CX Chan RNA biology 11 (3), 176-185, 2014 | 17 | 2014 |
| Aging at evolutionary crossroads: longitudinal gene co-expression network analyses of proximal and ultimate causes of aging in bats G Bernard, J Teuliere, P Lopez, E Corel, FJ Lapointe, E Bapteste Molecular biology and evolution 39 (1), msab302, 2022 | 5 | 2022 |
| Inferring phylogenomic relationship of microbes using scalable alignment-free methods G Bernard, TG Stephens, RA González-Pech, CX Chan Bacterial Pangenomics: Methods and Protocols, 69-76, 2021 | 5 | 2021 |
| The distribution of genes associated with regulated cell death is decoupled from the mitochondrial phenotypes within unicellular eukaryotic hosts J Teulière, G Bernard, E Bapteste Frontiers in Cell and Developmental Biology 8, 536389, 2020 | 2 | 2020 |
| 143 Prokaryote genomes G Bernard, CX Chan, MA Ragan The University of Queensland, 2016 | 1 | 2016 |
| Alignment-free network of 143 prokaryote genomes G Bernard, CX Chan, MA Ragan The University of Queensland, 2016 | 1 | 2016 |
| Network studies unveil new groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean D Sussfeld, R Lannes, E Corel, G Bernard, P Martin, E Bapteste, ... bioRxiv, 2024.01. 08.574615, 2024 | | 2024 |
