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Simon Lin Linwood, MD, MBA
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lumi: a pipeline for processing Illumina microarray
P Du, WA Kibbe, SM Lin
Bioinformatics 24 (13), 1547-1548, 2008
23342008
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
P Du, X Zhang, CC Huang, N Jafari, WA Kibbe, L Hou, SM Lin
BMC bioinformatics 11 (1), 587, 2010
21152010
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
LJ Zhu, C Gazin, ND Lawson, H Pagès, SM Lin, DS Lapointe, MR Green
BMC bioinformatics 11 (1), 237, 2010
10792010
Privacy in pharmacogenetics: An end-to-end case study of personalized warfarin dosing
M Fredrikson, E Lantz, S Jha, S Lin, D Page, T Ristenpart
23rd USENIX Security Symposium (USENIX Security 14), 17-32, 2014
10042014
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
P Du, WA Kibbe, SM Lin
Bioinformatics 22 (17), 2059-2065, 2006
9212006
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nature biotechnology 28 (8), 827, 2010
8522010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
SEQC/MAQC-III Consortium
Nature Biotechnology 32 (9), 903-914, 2014
8452014
Model-based variance-stabilizing transformation for Illumina microarray data
SM Lin, P Du, W Huber, WA Kibbe
Nucleic acids research 36 (2), e11-e11, 2008
6122008
Transcriptional profiling of the Sonic hedgehog response: a critical role for N-myc in proliferation of neuronal precursors
TG Oliver, LL Grasfeder, AL Carroll, C Kaiser, CL Gillingham, SM Lin, ...
Proceedings of the National Academy of Sciences 100 (12), 7331-7336, 2003
4352003
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
3982015
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ...
The pharmacogenomics journal 10 (4), 278-291, 2010
3562010
Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma
TG Oliver, TA Read, JD Kessler, A Mehmeti, JF Wells, TTT Huynh, SM Lin, ...
Development 132 (10), 2425-2439, 2005
3062005
Annotating the human genome with Disease Ontology
JD Osborne, J Flatow, M Holko, SM Lin, WA Kibbe, LJ Zhu, MI Danila, ...
BMC genomics 10 (Suppl 1), S6, 2009
2962009
Design and Anticipated Outcomes of the eMERGE‐PGx Project: A Multicenter Pilot for Preemptive Pharmacogenomics in Electronic Health Record Systems
LJ Rasmussen‐Torvik, SC Stallings, AS Gordon, B Almoguera, ...
Clinical Pharmacology & Therapeutics 96 (4), 482-489, 2014
2552014
Ultrastructural, immunofluorescence, and RNA evidence support the hypothesis of a “new” virus associated with Kawasaki disease
AH Rowley, SC Baker, ST Shulman, KH Rand, MS Tretiakova, ...
Journal of Infectious Diseases 203 (7), 1021-1030, 2011
1622011
Genome-wide DNA methylation indicates silencing of tumor suppressor genes in uterine leiomyoma
A Navarro, P Yin, D Monsivais, SM Lin, P Du, JJ Wei, SE Bulun
PloS one 7 (3), e33284, 2012
1452012
Data mining issues and opportunities for building nursing knowledge
L Goodwin, M VanDyne, S Lin, S Talbert
Journal of Biomedical Informatics 36 (4), 379-388, 2003
1402003
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations
P Du, G Feng, J Flatow, J Song, M Holko, WA Kibbe, SM Lin
Bioinformatics 25 (12), i63-i68, 2009
1352009
Genomics of human intracranial aneurysm wall
C Shi, IA Awad, N Jafari, S Lin, P Du, ZA Hage, R Shenkar, CC Getch, ...
Stroke 40 (4), 1252-1261, 2009
1322009
Opportunities for drug repositioning from phenome-wide association studies
M Rastegar-Mojarad, Z Ye, JM Kolesar, SJ Hebbring, SM Lin
Nature biotechnology 33 (4), 342-345, 2015
1292015
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Articles 1–20