Jakub Westholm
Title
Cited by
Cited by
Year
Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
JO Westholm, P Miura, S Olson, S Shenker, B Joseph, P Sanfilippo, ...
Cell reports 9 (5), 1966-1980, 2014
4862014
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
PL Ståhl, F Salmén, S Vickovic, A Lundmark, J Fernández Navarro, ...
Science 353 (6294), 78-82, 2016
4272016
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
MJ Axtell, JO Westholm, EC Lai
Genome biology 12 (4), 221, 2011
4272011
Mirtrons: microRNA biogenesis via splicing
JO Westholm, EC Lai
Biochimie, 2011
2542011
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
E Berezikov, N Robine, A Samsonova, JO Westholm, A Naqvi, JH Hung, ...
Genome research 21 (2), 203-215, 2011
2422011
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
P Miura, S Shenker, C Andreu-Agullo, JO Westholm, EC Lai
Genome research 23 (5), 812-825, 2013
2342013
Global patterns of tissue-specific alternative polyadenylation in Drosophila
P Smibert, P Miura, JO Westholm, S Shenker, G May, MO Duff, D Zhang, ...
Cell reports 1 (3), 277-289, 2012
1992012
Discovery of hundreds of mirtrons in mouse and human small RNA data
E Ladewig, K Okamura, AS Flynt, JO Westholm, EC Lai
Genome research 22 (9), 1634-1645, 2012
1812012
Endocan is a VEGF-A and PI3K regulated gene with increased expression in human renal cancer
E Rennel, S Mellberg, A Dimberg, L Petersson, J Botling, A Ameur, ...
Experimental cell research 313 (7), 1285-1294, 2007
1272007
Transcriptional profiling reveals a critical role for tyrosine phosphatase VE‐PTP in regulation of VEGFR2 activity and endothelial cell morphogenesis
S Mellberg, A Dimberg, F Bahram, M Hayashi, E Rennel, A Ameur, ...
The FASEB Journal 23 (5), 1490-1502, 2009
962009
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
WJ Chung, P Agius, JO Westholm, M Chen, K Okamura, N Robine, ...
Genome Research 21 (2), 286-300, 2011
792011
Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3
JO Westholm, N Nordberg, E Murén, A Ameur, J Komorowski, H Ronne
BMC genomics 9 (1), 1-15, 2008
792008
Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs
JO Westholm, E Ladewig, K Okamura, N Robine, EC Lai
Rna 18 (2), 177-192, 2012
642012
Neurophysiological defects and neuronal gene deregulation in Drosophila mir-124 mutants
K Sun, JO Westholm, K Tsurudome, JW Hagen, Y Lu, M Kohwi, D Betel, ...
PLoS Genet 8 (2), e1002515, 2012
522012
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
J Wen, J Mohammed, D Bortolamiol-Becet, H Tsai, N Robine, ...
Genome research 24 (7), 1236-1250, 2014
512014
Histone modifications influence mediator interactions with chromatin
X Zhu, Y Zhang, G Bjornsdottir, Z Liu, A Quan, M Costanzo, ...
Nucleic acids research 39 (19), 8342-8354, 2011
472011
The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors
Q Dai, A Ren, JO Westholm, AA Serganov, DJ Patel, EC Lai
Genes & development 27 (6), 602-614, 2013
462013
Gis1 and Rph1 regulate glycerol and acetate metabolism in glucose depleted yeast cells
JO Westholm, S Tronnersjö, N Nordberg, I Olsson, J Komorowski, ...
PloS one 7 (2), e31577, 2012
412012
Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans
J Cedernaes, M Schönke, JO Westholm, J Mi, A Chibalin, S Voisin, ...
Science advances 4 (8), eaar8590, 2018
302018
Massive and parallel expression profiling using microarrayed single-cell sequencing
S Vickovic, PL Ståhl, F Salmén, S Giatrellis, JO Westholm, A Mollbrink, ...
Nature communications 7 (1), 1-9, 2016
282016
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Articles 1–20