Jaak Simm
Jaak Simm
Postdoctoral researcher, University of Leuven
Verified email at esat.kuleuven.be
Cited by
Cited by
Characterization of the vaginal micro-and mycobiome in asymptomatic reproductive-age Estonian women
T Drell, T Lillsaar, L Tummeleht, J Simm, A Aaspõllu, E Väin, I Saarma, ...
PloS one 8 (1), e54379, 2013
Repurposing high-throughput image assays enables biological activity prediction for drug discovery
J Simm, G Klambauer, A Arany, M Steijaert, JK Wegner, E Gustin, ...
Cell chemical biology 25 (5), 611-618. e3, 2018
High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissues
M Saare, K Rekker, T Laisk-Podar, D Sõritsa, AM Roost, J Simm, ...
PloS one 9 (11), e112630, 2014
Changes in the transcriptome of the human endometrial Ishikawa cancer cell line induced by estrogen, progesterone, tamoxifen, and mifepristone (RU486) as detected by RNA-sequencing
K Tamm-Rosenstein, J Simm, M Suhorutshenko, A Salumets, M Metsis
PLoS One 8 (7), e68907, 2013
Research resource: small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes
A Velthut-Meikas, J Simm, T Tuuri, JS Tapanainen, M Metsis, A Salumets
Molecular endocrinology 27 (7), 1128-1141, 2013
Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation
M Bessmeltseva, E Viiard, J Simm, T Paalme, I Sarand
PLoS One 9 (4), e95449, 2014
Easy hyperparameter search using optunity
M Claesen, J Simm, D Popovic, Y Moreau, B De Moor
arXiv preprint arXiv:1412.1114, 2014
The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing
T Drell, I Lutsar, J Štšepetova, Ü Parm, T Metsvaht, ML Ilmoja, J Simm, ...
Gut Microbes 5 (3), 304-503, 2014
Tree-based ensemble multi-task learning method for classification and regression
J Simm, IM de Abril, M Sugiyama
IEICE TRANSACTIONS on Information and Systems 97 (6), 1677-1681, 2014
Hyperparameter tuning in Python using Optunity
M Claesen, J Simm, D Popovic, BD Moor
Proceedings of the International Workshop on Technical Computing for Machine …, 2014
Endometrial transcriptome analysis indicates superiority of natural over artificial cycles in recurrent implantation failure patients undergoing frozen embryo transfer
S Altmäe, K Tamm-Rosenstein, FJ Esteban, J Simm, L Kolberg, ...
Reproductive biomedicine online 32 (6), 597-613, 2016
Macau: Scalable Bayesian factorization with high-dimensional side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
2017 IEEE 27th International Workshop on Machine Learning for Signal …, 2017
The influence of different maternal microbial communities on the development of infant gut and oral microbiota
T Drell, J Štšepetova, J Simm, K Rull, A Aleksejeva, A Antson, V Tillmann, ...
Scientific reports 7 (1), 1-9, 2017
Diversity and stability of lactic acid bacteria in rye sourdoughs of four bakeries with different propagation parameters
E Viiard, M Bessmeltseva, J Simm, T Talve, A Aaspõllu, T Paalme, ...
PloS one 11 (2), e0148325, 2016
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
T Moerman, S Aibar Santos, C Bravo González-Blas, J Simm, Y Moreau, ...
Bioinformatics 35 (12), 2159-2161, 2019
Linking drug target and pathway activation for effective therapy using multi-task learning
M Yang, J Simm, CC Lam, P Zakeri, GJP van Westen, Y Moreau, ...
Scientific reports 8 (1), 1-10, 2018
Macau: scalable bayesian multi-relational factorization with side information using MCMC
J Simm, A Arany, P Zakeri, T Haber, JK Wegner, V Chupakhin, ...
arXiv preprint arXiv:1509.04610, 2015
Direct importance estimation with a mixture of probabilistic principal component analyzers
M Yamada, M Sugiyama, G Wichern, J Simm
IEICE Transactions on Information and Systems 93 (10), 2846-2849, 2010
RDEA: robust data envelopment analysis (DEA) for R
J Simm, G Besstremyannaya
R, 2015
Spatial variability of winter bacterioplankton community composition in the Gulf of Finland (the Baltic Sea)
P Laas, J Simm, I Lips, M Metsis
Journal of Marine Systems 129, 127-134, 2014
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Articles 1–20