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Tom Burnley
Tom Burnley
CCP-EM STFC
Verified email at stfc.ac.uk - Homepage
Title
Cited by
Cited by
Year
Recent developments in the CCP‐EM software suite
T Burnley, CM Palmer, M Winn
Acta Crystallographica Section D 73 (6), 469-477, 2017
2782017
Modelling dynamics in protein crystal structures by ensemble refinement
BT Burnley, PV Afonine, PD Adams, P Gros
Elife 1, e00311, 2012
2762012
Cryo-EM single-particle structure refinement and map calculation using Servalcat
K Yamashita, CM Palmer, T Burnley, GN Murshudov
Acta Crystallographica Section D: Structural Biology 77 (10), 2021
1132021
Oligobenzamide proteomimetic inhibitors of the p53–h DM2 protein–protein interaction
JP Plante, T Burnley, B Malkova, ME Webb, SL Warriner, TA Edwards, ...
Chemical Communications, 5091-5093, 2009
1082009
Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment
AP Joseph, S Malhotra, T Burnley, C Wood, DK Clare, M Winn, M Topf
Methods 100, 42-49, 2016
972016
Collaborative Computational Project for Electron cryo‐Microscopy
C Wood, T Burnley, A Patwardhan, S Scheres, M Topf, A Roseman, ...
Acta Crystallographica Section D 71 (1), 123-126, 2015
852015
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ...
Nature methods 18 (2), 156-164, 2021
722021
Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D
F Forneris, BT Burnley, P Gros
Acta Crystallographica Section D: Biological Crystallography 70 (3), 733-743, 2014
382014
Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM
SW Hoh, T Burnley, K Cowtan
Acta Crystallographica Section D: Structural Biology 76 (6), 531-541, 2020
292020
Comparing cryo-EM reconstructions and validating atomic model fit using difference maps
AP Joseph, I Lagerstedt, A Jakobi, T Burnley, A Patwardhan, M Topf, ...
Journal of chemical information and modeling 60 (5), 2552-2560, 2020
272020
Improving sampling of crystallographic disorder in ensemble refinement
N Ploscariu, T Burnley, P Gros, NM Pearce
Acta Crystallographica Section D: Structural Biology 77 (11), 1357-1364, 2021
212021
phenix. ensemble_refinement: a test study of apo and holo BACE1
BT Burnley, P Gros
Computational crystallography newsletter 4, 51-58, 2013
202013
The development and application of a gas chromatography-mass spectrometric (GC-MS) assay to determine the presence of 2-oxo-3-hydroxy-LSD in urine
BT Burnley, S George
Journal of analytical toxicology 27 (4), 249-252, 2003
172003
Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action
A Trifan, D Gorgun, Z Li, A Brace, M Zvyagin, H Ma, AR Clyde, DA Clark, ...
bioRxiv, 2021
122021
Automating tasks in protein structure determination with the Clipper Python module
S McNicholas, T Croll, T Burnley, CM Palmer, SW Hoh, HT Jenkins, ...
Protein Science 27 (1), 207-216, 2018
102018
Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution
CL Lawson, A Kryshtafovych, PD Adams, P Afonine, ML Baker, BA Barad, ...
bioRxiv, 2020
82020
Atomic model validation using the CCP-EM software suite
AP Joseph, M Olek, S Malhotra, P Zhang, K Cowtan, T Burnley, MD Winn
Acta Crystallographica Section D: Structural Biology 78 (2), 2022
72022
An efficient biomimetic assembly of a macroscopic polyhedral shell from identical subunits
BT Burnley, JPL Cox
Materials Science and Engineering: C 25 (4), 529-540, 2005
52005
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription …
A Trifan, D Gorgun, M Salim, Z Li, A Brace, M Zvyagin, H Ma, A Clyde, ...
The International Journal of High Performance Computing Applications …, 2022
32022
Introducing the Proceedings of the CCP-EM Spring Symposium.
T Burnley
Acta crystallographica. Section D, Structural biology 73 (Pt 6), 467-468, 2017
32017
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Articles 1–20