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Joseph D. Romano
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Year
Informatics and computational methods in natural product drug discovery: A review and perspectives
JD Romano, NP Tatonetti
Frontiers in Genetics 10, 368, 2019
512019
Systems biology approaches for identifying adverse drug reactions and elucidating their underlying biological mechanisms
MR Boland, A Jacunski, T Lorberbaum, JD Romano, R Moskovitch, ...
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 8 (2), 104-122, 2016
412016
PMLB v1. 0: an open-source dataset collection for benchmarking machine learning methods
JD Romano, TT Le, W La Cava, JT Gregg, DJ Goldberg, P Chakraborty, ...
Bioinformatics 38 (3), 878-880, 2022
152022
TPOT-NN: Augmenting tree-based automated machine learning with neural network estimators
JD Romano, TT Le, W Fu, JH Moore
Genetic Programming and Evolvable Machines 22 (2), 207-227, 2021
82021
VenomKB, a new knowledge base for facilitating the validation of putative venom therapies
JD Romano, NP Tatonetti
Scientific data 2 (1), 1-9, 2015
82015
Embedding covariate adjustments in tree-based automated machine learning for biomedical big data analyses
E Manduchi, W Fu, JD Romano, S Ruberto, JH Moore
BMC bioinformatics 21 (1), 1-13, 2020
52020
Using a Novel Ontology to Inform the Discovery of Therapeutic Peptides from Animal Venoms
JD Romano, NP Tatonetti
AMIA Summits on Translational Science Proceedings 2016, 209, 2016
42016
Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships
JD Romano, WG Tharp, IN Sarkar
Journal of biomedical informatics 54, 10-38, 2015
32015
Improving QSAR Modeling for Predictive Toxicology using Publicly Aggregated Semantic Graph Data and Graph Neural Networks
JD Romano, Y Hao, JH Moore
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 187-198, 2021
22021
VenomKB v2. 0: A knowledge repository for computational toxinology
J Romano, V Nwankwo, N Tatonetti
bioRxiv, 295204, 2018
22018
Knowledge-guided deep learning models of drug toxicity improve interpretation
Y Hao, JD Romano, JH Moore
bioRxiv, 2022
2022
The promise of automated machine learning for the genetic analysis of complex traits
E Manduchi, JD Romano, JH Moore
Human Genetics, 1-16, 2021
2021
Ten simple rules for writing a paper about scientific software
JD Romano, JH Moore
PLOS Computational Biology 16 (11), e1008390, 2020
2020
Discovering therapeutic activities from venoms using differential gene expression
JD Romano, H Li, R Realubit, C Karan, NP Tatonetti
bioRxiv, 699280, 2019
2019
A Decade of Translational Bioinformatics: A Retrospective Analysis of “Year-in-Review” Presentations
JD Romano, M Bernauer, SP McGrath, SD Nagar, RR Freimuth
AMIA Summits on Translational Science Proceedings 2019, 335, 2019
2019
Computational Toxinology
JD Romano
Columbia University, 2019
2019
nSides: An interactive drug-side effect gateway
RS Vanguri, JD Romano, T Lorberbaum, C Youn, V Nwankwo, ...
Gateways 2017, 2017
2017
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Articles 1–17