| The genetics of transcription factor DNA binding variation B Deplancke, D Alpern, V Gardeux Cell 166 (3), 538-554, 2016 | 360 | 2016 |
| Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ... Science 375 (6584), eabk2432, 2022 | 350 | 2022 |
| BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing D Alpern, V Gardeux, J Russeil, B Mangeat, ACA Meireles-Filho, ... Genome biology 20, 1-15, 2019 | 164 | 2019 |
| ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data V Gardeux, FPA David, A Shajkofci, PC Schwalie, B Deplancke Bioinformatics 33 (19), 3123-3125, 2017 | 121 | 2017 |
| Live-seq enables temporal transcriptomic recording of single cells W Chen, O Guillaume-Gentil, PY Rainer, CG Gäbelein, W Saelens, ... Nature 608 (7924), 733-740, 2022 | 120 | 2022 |
| Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium P V’kovski, M Gultom, JN Kelly, S Steiner, J Russeil, B Mangeat, E Cora, ... PLoS biology 19 (3), e3001158, 2021 | 118 | 2021 |
| Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle ET Friman, C Deluz, ACA Meireles-Filho, S Govindan, V Gardeux, ... Elife 8, e50087, 2019 | 65 | 2019 |
| The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools AD Boyd, JJ Li, MD Burton, M Jonen, V Gardeux, I Achour, RQ Luo, ... Journal of the American Medical Informatics Association 20 (4), 708-717, 2013 | 57 | 2013 |
| ‘N-of-1-pathways’ unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine V Gardeux, I Achour, J Li, M Maienschein-Cline, H Li, L Pesce, ... Journal of the American Medical Informatics Association 21 (6), 1015-1025, 2014 | 42 | 2014 |
| EM323: a line search based algorithm for solving high-dimensional continuous non-linear optimization problems V Gardeux, R Chelouah, P Siarry, F Glover Soft Computing 15, 2275-2285, 2011 | 39 | 2011 |
| Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition J Bues, M Biočanin, J Pezoldt, R Dainese, A Chrisnandy, S Rezakhani, ... Nature Methods 19 (3), 323-330, 2022 | 38* | 2022 |
| GA-KDE-Bayes: an evolutionary wrapper method based on non-parametric density estimation applied to bioinformatics problems. MFB Wanderley, V Gardeux, R Natowicz, A de Pádua Braga ESANN, 2013 | 31 | 2013 |
| Unidimensional search for solving continuous high-dimensional optimization problems V Gardeux, R Chelouah, P Siarry, F Glover 2009 Ninth International Conference on Intelligent Systems Design and …, 2009 | 31 | 2009 |
| A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations V Gardeux, J Berghout, I Achour, AG Schissler, Q Li, C Kenost, J Li, ... Journal of the American Medical Informatics Association 24 (6), 1116-1126, 2017 | 28 | 2017 |
| N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes Q Li, AG Schissler, V Gardeux, I Achour, C Kenost, J Berghout, H Li, ... BMC Medical Genomics 10, 5-16, 2017 | 28 | 2017 |
| Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo J Liu, M Frochaux, V Gardeux, B Deplancke, M Robinson-Rechavi BMC biology 18, 1-12, 2020 | 27* | 2020 |
| Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions H Li, I Achour, L Bastarache, J Berghout, V Gardeux, J Li, Y Lee, L Pesce, ... NPJ genomic medicine 1 (1), 1-12, 2016 | 27 | 2016 |
| Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival AG Schissler, V Gardeux, Q Li, I Achour, H Li, WW Piegorsch, YA Lussier Bioinformatics 31 (12), i293-i302, 2015 | 27 | 2015 |
| Conception d'heuristiques d'optimisation pour les problèmes de grande dimension: application à l'analyse de données de puces à ADN V Gardeux Paris Est, 2011 | 27 | 2011 |
| Extensive tissue-specific expression variation and novel regulators underlying circadian behavior M Litovchenko, ACA Meireles-Filho, MV Frochaux, RPJ Bevers, ... Science advances 7 (5), eabc3781, 2021 | 23 | 2021 |
Bart DeplanckeProfessor in Systems Biology and Genetics at EPFLVerified email at epfl.ch
