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William Duncan
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OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1212021
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ...
Nucleic acids research 45 (D1), D339-D346, 2017
902017
The neurological disease ontology
M Jensen, AP Cox, N Chaudhry, M Ng, D Sule, W Duncan, P Ray, ...
Journal of biomedical semantics 4, 1-10, 2013
532013
The national microbiome data collaborative: enabling microbiome science
EM Wood-Charlson, Anubhav, D Auberry, H Blanco, MI Borkum, ...
Nature Reviews Microbiology 18 (6), 313-314, 2020
502020
A simple standard for sharing ontological mappings (SSSOM)
N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ...
Database 2022, 2022
432022
Microbiome metadata standards: Report of the national microbiome data collaborative’s workshop and follow-on activities
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (1), 10.1128/msystems. 01194-20, 2021
382021
Zidovudine (AZT) versus AZT plus didanosine (ddI) versus AZT plus zalcitabine (ddC) in HIV infected adults
J Darbyshire, M Foulkes, R Peto, W Duncan, A Babiker, R Collins, ...
Cochrane database of systematic reviews 2010 (3), 1996
321996
Leveraging electronic dental record data for clinical research in the national dental PBRN practices
TP Thyvalikakath, WD Duncan, Z Siddiqui, M LaPradd, G Eckert, ...
Applied Clinical Informatics 11 (02), 305-314, 2020
302020
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies
N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff, S Carbon, ...
Database 2022, baac087, 2022
272022
Ontological distinctions between hardware and software
WD Duncan
Applied Ontology 12 (1), 5-32, 2017
262017
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
EA Eloe-Fadrosh, F Ahmed, M Babinski, J Baumes, M Borkum, L Bramer, ...
Nucleic Acids Research 50 (D1), D828-D836, 2022
232022
Immediate versus deferred zidovudine (AZT) in asymptomatic or mildly symptomatic HIV infected adults
J Darbyshire, M Foulkes, R Peto, W Duncan, A Babiker, R Collins, ...
Cochrane database of systematic reviews 2010 (3), 1996
221996
Representing vision and blindness
PL Ray, AP Cox, M Jensen, T Allen, W Duncan, AD Diehl
Journal of biomedical semantics 7, 1-12, 2016
172016
An ontology-based method for secondary use of electronic dental record data
TKL Schleyer, A Ruttenberg, W Duncan, M Haendel, C Torniai, A Acharya, ...
AMIA Summits on Translational Science Proceedings 2013, 234, 2013
172013
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics.
SAT Moxon, H Solbrig, DR Unni, D Jiao, RM Bruskiewich, JP Balhoff, ...
ICBO, 148-151, 2021
162021
An ontology for representing hematologic malignancies: the cancer cell ontology
LM Serra, WD Duncan, AD Diehl
BMC bioinformatics 20, 231-236, 2019
152019
Root canal treatment survival analysis in national dental PBRN practices
T Thyvalikakath, M LaPradd, Z Siddiqui, WD Duncan, G Eckert, JK Medam, ...
Journal of dental research 101 (11), 1328-1334, 2022
142022
First steps towards an ontology of belief
A Barton, W Duncan, F Toyoshima, JF Ethier
Joint Ontology Workshops-JOWO 2018, co-located with the 10th International …, 2018
122018
Microbiome metadata standards: report of the National Microbiome Data Collaborative’s Workshop and follow-on activities. mSystems 6: e01194-20
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
PubMed PubMed Central, 2021
112021
Challenges in bioinformatics workflows for processing microbiome omics data at scale
B Hu, S Canon, EA Eloe-Fadrosh, Anubhav, M Babinski, Y Corilo, ...
Frontiers in Bioinformatics 1, 826370, 2022
92022
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Articles 1–20