| Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population M Bezdicek, M Nykrynova, K Plevova, E Brhelova, I Kocmanova, K Sedlar, ... PLoS One 14 (8), e0221187, 2019 | 13 | 2019 |
| Flavobacterium flabelliforme sp. nov. and Flavobacterium geliluteum sp. nov., two multidrug-resistant psychrotrophic species isolated from Antarctica S Králová, HJ Busse, M Bezdíček, M Sandoval-Powers, M Nykrýnová, ... Frontiers in Microbiology 12, 729977, 2021 | 9 | 2021 |
| Diversity and Evolution of Clostridium beijerinckii and Complete Genome of the Type Strain DSM 791T K Sedlar, M Nykrynova, M Bezdicek, B Branska, M Lengerova, ... Processes 9 (7), 1196, 2021 | 8 | 2021 |
| Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms M Bezdicek, M Nykrynova, K Sedlar, S Kralova, J Hanslikova, ... Scientific reports 11 (1), 16572, 2021 | 7 | 2021 |
| Sequencing independent molecular typing of Staphylococcus aureus isolates: approach for infection control and clonal characterization K Dufkova, M Bezdicek, K Cuprova, D Pantuckova, M Nykrynova, ... Microbiology Spectrum 10 (1), e01817-21, 2022 | 5 | 2022 |
| Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping M Nykrynova, V Barton, M Bezdicek, M Lengerova, H Skutkova BMC genomics 23 (Suppl 3), 445, 2022 | 3 | 2022 |
| Using deep learning for gene detection and classification in raw nanopore signals M Nykrynova, R Jakubicek, V Barton, M Bezdicek, M Lengerova, ... Frontiers in Microbiology 13, 942179, 2022 | 3 | 2022 |
| CNproScan: Hybrid CNV detection for bacterial genomes R Jugas, K Sedlar, M Vitek, M Nykrynova, V Barton, M Bezdicek, ... Genomics 113 (5), 3103-3111, 2021 | 3 | 2021 |
| Bioinformatic tools for genotyping of Klebsiella pneumoniae isolates M Nykrynova, D Maderankova, M Bezdicek, M Lengerova, H Skutkova Information Technology in Biomedicine: Proceedings 6th International …, 2019 | 3 | 2019 |
| New multilocus sequence typing scheme for Enterococcus faecium based on whole genome sequencing data M Bezdicek, J Hanslikova, M Nykrynova, K Dufkova, I Kocmanova, ... Microbiology Spectrum 11 (4), e05107-22, 2023 | 2 | 2023 |
| MANASIG: Python package to manipulate nanopore signals from sequencing files V Bartoň, M Nykrýnová, H Škutková 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 2 | 2021 |
| Raw nanopore squiggle alignment for bacterial typing distinction enhancement M Nykrynova, V Barton, M Vitek, M Bezdicek, M Lengerova, H Skutkova 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 2 | 2021 |
| Entropy-based detection of genetic markers for bacteria genotyping M Nykrynova, D Maderankova, V Barton, M Bezdicek, M Lengerova, ... Bioinformatics and Biomedical Engineering: 7th International Work-Conference …, 2019 | 2 | 2019 |
| Word Entropy-Based Approach to Detect Highly Variable Genetic Markers for Bacterial Genotyping M Nykrynova, V Barton, K Sedlar, M Bezdicek, M Lengerova, H Skutkova Frontiers in Microbiology 12, 631605, 2021 | 1 | 2021 |
| Detecting horizontal gene transfer among microbiota: an innovative pipeline for identifying co-shared genes within the mobilome through advanced comparative analysis J Schwarzerova, M Zeman, V Babak, K Jureckova, M Nykrynova, M Varga, ... Microbiology Spectrum 12 (1), e01964-23, 2024 | | 2024 |
| Bacterial phenotype prediction based on methylation site profiles M Nykrynova, M Bezdicek, M Lengerova, H Skutkova 2023 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2023 | | 2023 |
| Rapid Identification of Pseudomonas aeruginosa International High-Risk Clones Based on High-Resolution Melting Analysis K Dufkova, M Bezdicek, M Nykrynova, I Kocmanova, P Kubackova, ... Microbiology Spectrum 11 (1), e03571-22, 2023 | | 2023 |
| Hybrid mapping for plasmid content determination in NGS data. M Nykrýnová, M Bezdíček, K Dufková, M Lengerová, H Skutková | | 2023 |
| Application of second-and third-generation sequencing for bacterial typing M Bedíček, K Dufková, M Nykrýnová, J Hansliková, M Lengerová Klinicka Mikrobiologie a Infekcni Lekarstvi 28 (4), 106-115, 2022 | | 2022 |
| Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes M Nykrynova, V Barton, M Bezdicek, M Lengerova, H Skutkova International Work-Conference on Bioinformatics and Biomedical Engineering …, 2020 | | 2020 |
