Gur Yaari
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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
NT Gupta, JA Vander Heiden, M Uduman, D Gadala-Maria, G Yaari, ...
Bioinformatics 31 (20), 3356-3358, 2015
Germinal center B cell and T follicular helper cell development initiates in the interfollicular zone
SM Kerfoot, G Yaari, JR Patel, KL Johnson, DG Gonzalez, SH Kleinstein, ...
Immunity 34 (6), 947-960, 2011
B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes
JNH Stern, G Yaari, JA Vander Heiden, G Church, WF Donahue, ...
Science translational medicine 6 (248), 248ra107-248ra107, 2014
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
JA Vander Heiden, G Yaari, M Uduman, JNH Stern, KC O’connor, ...
Bioinformatics 30 (13), 1930-1932, 2014
The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies
D Sok, U Laserson, J Laserson, Y Liu, F Vigneault, JP Julien, B Briney, ...
PLoS pathogens 9 (11), e1003754, 2013
Practical guidelines for B-cell receptor repertoire sequencing analysis
G Yaari, SH Kleinstein
Genome medicine 7, 1-14, 2015
Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data
G Yaari, JA Vander Heiden, M Uduman, D Gadala-Maria, N Gupta, ...
Frontiers in immunology 4, 358, 2013
Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles
D Gadala-Maria, G Yaari, M Uduman, SH Kleinstein
Proceedings of the National Academy of Sciences 112 (8), E862-E870, 2015
Quantifying selection in high-throughput Immunoglobulin sequencing data sets
G Yaari, M Uduman, SH Kleinstein
Nucleic acids research 40 (17), e134-e134, 2012
Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations
G Yaari, CR Bolen, J Thakar, SH Kleinstein
Nucleic acids research 41 (18), e170-e170, 2013
High-resolution antibody dynamics of vaccine-induced immune responses
U Laserson, F Vigneault, D Gadala-Maria, G Yaari, M Uduman, ...
Proceedings of the National Academy of Sciences 111 (13), 4928-4933, 2014
Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
S Perez, A Kaspi, T Domovitz, A Davidovich, A Lavi-Itzkovitz, T Meirson, ...
PLoS genetics 15 (6), e1008181, 2019
Fast image-guided stratification using anti-programmed death ligand 1 gold nanoparticles for cancer immunotherapy
R Meir, K Shamalov, T Sadan, M Motiei, G Yaari, CJ Cohen, R Popovtzer
ACS nano 11 (11), 11127-11134, 2017
Detecting selection in immunoglobulin sequences
M Uduman, G Yaari, U Hershberg, JA Stern, MJ Shlomchik, SH Kleinstein
Nucleic acids research 39 (suppl_2), W499-W504, 2011
Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping
M Gidoni, O Snir, A Peres, P Polak, I Lindeman, I Mikocziova, VK Sarna, ...
Nature communications 10 (1), 628, 2019
The immune cell infiltrate populating meningiomas is composed of mature, antigen-experienced T and B cells
L Fang, DE Lowther, ML Meizlish, RCE Anderson, JN Bruce, L Devine, ...
Neuro-oncology 15 (11), 1479-1490, 2013
The hot (invisible?) hand: can time sequence patterns of success/failure in sports be modeled as repeated random independent trials?
G Yaari, S Eisenmann
PloS one 6 (10), e24532, 2011
Tumor-reactive antibodies evolve from non-binding and autoreactive precursors
RD Mazor, N Nathan, A Gilboa, L Stoler-Barak, L Moss, I Solomonov, ...
Cell 185 (7), 1208-1222. e21, 2022
Mining adaptive immune receptor repertoires for biological and clinical information using machine learning
V Greiff, G Yaari, LG Cowell
Current Opinion in Systems Biology 24, 109-119, 2020
The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales
G Yaari, JIC Benichou, JA Vander Heiden, SH Kleinstein, Y Louzoun
Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015
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Articles 1–20