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Fabrizio Ferrè
Fabrizio Ferrè
University of Bologna Alma Mater, Department of Pharmacology and Biotechnology (FaBiT)
Verified email at uniroma2.it
Title
Cited by
Cited by
Year
Elective surgery cancellations due to the COVID-19 pandemic: global predictive modelling to inform surgical recovery plans
Journal of British Surgery 107 (11), 1440-1449, 2020
11252020
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins
P Puntervoll, R Linding, C Gemünd, S Chabanis-Davidson, M Mattingsdal, ...
Nucleic acids research 31 (13), 3625-3630, 2003
7542003
The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset
CJ Ceol, Y Houvras, J Jane-Valbuena, S Bilodeau, DA Orlando, V Battisti, ...
Nature 471 (7339), 513-517, 2011
6072011
Revealing protein–lncRNA interaction
F Ferre, A Colantoni, M Helmer-Citterich
Briefings in bioinformatics 17 (1), 106-116, 2016
5852016
DiANNA: a web server for disulfide connectivity prediction
F Ferrè, P Clote
Nucleic acids research 33 (suppl_2), W230-W232, 2005
4002005
DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification
F Ferrè, P Clote
Nucleic acids research 34 (suppl_2), W182-W185, 2006
2522006
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
P Clote, F Ferré, E Kranakis, D Krizanc
Rna 11 (5), 578-591, 2005
2472005
Disulfide connectivity prediction using secondary structure information and diresidue frequencies
F Ferrè, P Clote
Bioinformatics 21 (10), 2336-2346, 2005
1522005
Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution
A Via, F Ferrè, B Brannetti, A Valencia, M Helmer-Citterich
Journal of molecular biology 303 (4), 455-465, 2000
1082000
Protein surface similarities: a survey of methods to describe and compare protein surfaces
A Via, F Ferre, B Brannetti, M Helmer-Citterich*
Cellular and Molecular Life Sciences CMLS 57, 1970-1977, 2000
882000
SURFACE: a database of protein surface regions for functional annotation
F Ferrè, G Ausiello, A Zanzoni, M Helmer‐Citterich
Nucleic acids research 32 (suppl_1), D240-D244, 2004
852004
DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities
F Ferrè, Y Ponty, WA Lorenz, P Clote
Nucleic acids research 35 (suppl_2), W659-W668, 2007
842007
Caspase-8 contributes to angiogenesis and chemotherapy resistance in glioblastoma
G Fianco, MP Mongiardi, A Levi, T De Luca, M Desideri, D Trisciuoglio, ...
Elife 6, e22593, 2017
592017
RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk
A Crisà, F Ferrè, G Chillemi, B Moioli
BMC veterinary research 12, 1-21, 2016
592016
Modeling cancer drug response through drug-specific informative genes
L Parca, G Pepe, M Pietrosanto, G Galvan, L Galli, A Palmeri, ...
Scientific reports 9 (1), 15222, 2019
542019
A novel approach to represent and compare RNA secondary structures
E Mattei, G Ausiello, F Ferre, M Helmer-Citterich
Nucleic acids research 42 (10), 6146-6157, 2014
492014
Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50)
JL Williams, D Iamartino, KD Pruitt, T Sonstegard, TPL Smith, WY Low, ...
Gigascience 6 (10), gix088, 2017
472017
Role of CTCF Protein in Regulating FMR1 Locus Transcription
S Lanni, M Goracci, L Borrelli, G Mancano, P Chiurazzi, U Moscato, ...
PLoS Genetics 9 (7), e1003601, 2013
442013
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
F Ferre, G Ausiello, A Zanzoni, M Helmer-Citterich
BMC bioinformatics 6, 1-14, 2005
432005
Transcriptomic investigation of meat tenderness in two Italian cattle breeds
S Bongiorni, CEM Gruber, S Bueno, G Chillemi, F Ferrè, S Failla, B Moioli, ...
Animal genetics 47 (3), 273-287, 2016
392016
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Articles 1–20