Ian McDowell
Ian McDowell
Element Genomics, Inc. (UCB)
Verified email at ucb.com
Title
Cited by
Cited by
Year
Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
13442017
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
2562017
Direct GR binding sites potentiate clusters of TF binding across the human genome
CM Vockley, AM D’Ippolito, IC McDowell, WH Majoros, A Safi, L Song, ...
Cell 166 (5), 1269-1281. e19, 2016
1172016
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
1052017
Local genetic effects on gene expression across 44 human tissues
F Aguet, AA Brown, SE Castel, JR Davis, P Mohammadi, AV Segre, ...
BiorXiv, 074450, 2016
582016
Clustering gene expression time series data using an infinite Gaussian process mixture model
IC McDowell, D Manandhar, CM Vockley, AK Schmid, TE Reddy, ...
PLoS computational biology 14 (1), e1005896, 2018
572018
Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance
IC McDowell, C Nikapitiya, D Aguiar, CE Lane, S Istrail, M Gomez-Chiarri
PLoS One 9 (8), e105097, 2014
542014
Pre-established chromatin interactions mediate the genomic response to glucocorticoids
AM D'Ippolito, IC McDowell, A Barrera, LK Hong, SM Leichter, LC Bartelt, ...
Cell systems 7 (2), 146-160. e7, 2018
462018
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
462017
Context specific and differential gene co-expression networks via Bayesian biclustering
C Gao, IC McDowell, S Zhao, CD Brown, BE Engelhardt
PLoS computational biology 12 (7), e1004791, 2016
452016
Transversions have larger regulatory effects than transitions
C Guo, IC McDowell, M Nodzenski, DM Scholtens, AS Allen, WL Lowe, ...
Bmc Genomics 18 (1), 1-9, 2017
432017
Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding
IC McDowell, A Barrera, AM D'Ippolito, CM Vockley, LK Hong, ...
Genome research 28 (9), 1272-1284, 2018
362018
Multi-species protein similarity clustering reveals novel expanded immune gene families in the eastern oyster Crassostrea virginica
IC McDowell, TH Modak, CE Lane, M Gomez-Chiarri
Fish & shellfish immunology 53, 13-23, 2016
302016
Identification of potential general markers of disease resistance in American oysters, Crassostrea virginica through gene expression studies
C Nikapitiya, IC McDowell, L Villamil, P Muņoz, SB Sohn, ...
Fish & shellfish immunology 41 (1), 27-36, 2014
232014
Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels
IC McDowell, AA Pai, C Guo, CM Vockley, CD Brown, TE Reddy, ...
BioRxiv, 044719, 2016
122016
Human genome-wide measurement of drug-responsive regulatory activity
GD Johnson, A Barrera, IC McDowell, AM D’Ippolito, WH Majoros, ...
Nature communications 9 (1), 1-9, 2018
102018
A long-range flexible billboard model of gene activation
CM Vockley, IC McDowell, AM D'Ippolito, TE Reddy
Transcription 8 (4), 261-267, 2017
102017
Distant regulatory effects of genetic variation in multiple human tissues
B Jo, Y He, BJ Strober, P Parsana, F Aguet, AA Brown, SE Castel, ...
bioRxiv, 074419, 2016
102016
Consortium GT, Engelhardt BE, Battle A
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell
Genome Res 27 (11), 1843, 1858
71858
Differential gene co-expression networks via Bayesian biclustering models
C Gao, S Zhao, IC McDowell, CD Brown, BE Engelhardt
arXiv preprint arXiv:1411.1997, 2014
62014
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