עקוב אחר
Mathieu Seppey
Mathieu Seppey
Postdoc at University of Geneva Medical School and Swiss Institute of Bioinformatics
כתובת אימייל מאומתת בדומיין unige.ch
כותרת
צוטט על ידי
צוטט על ידי
שנה
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
M Manni, MR Berkeley, M Seppey, FA Simão, EM Zdobnov
Molecular biology and evolution 38 (10), 4647-4654, 2021
23212021
BUSCO applications from quality assessments to gene prediction and phylogenomics
RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ...
Molecular biology and evolution 35 (3), 543-548, 2018
18602018
BUSCO: assessing genome assembly and annotation completeness
M Seppey, M Manni, EM Zdobnov
Gene prediction: methods and protocols, 227-245, 2019
15742019
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ...
Nucleic acids research 45 (D1), D744-D749, 2017
4442017
BUSCO: assessing genomic data quality and beyond
M Manni, MR Berkeley, M Seppey, EM Zdobnov
Current Protocols 1 (12), e323, 2021
3792021
Gene prediction: methods and protocols
M Seppey, M Manni, EM Zdobnov, M Kollmar
Methods Mol. Biol 1962, 227-245, 2019
1522019
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals
FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ...
Nucleic acids research 49 (D1), D831-D847, 2021
1352021
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni, M Seppey, M Berkeley, ...
Nucleic Acids Research 51 (D1), D445-D451, 2023
992023
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders
P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ...
Genome biology and evolution 9 (2), 415-430, 2017
702017
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand
M Morales, V Sentchilo, C Bertelli, A Komljenovic, N Kryuchkova-Mostacci, ...
PLoS One 11 (11), e0165850, 2016
312016
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles
M Seppey, P Ioannidis, BC Emerson, C Pitteloud, M Robinson-Rechavi, ...
Genome biology 20, 1-14, 2019
282019
Using BUSCO to assess insect genomic resources
RM Waterhouse, M Seppey, FA Simão, EM Zdobnov
Insect Genomics: Methods and Protocols, 59-74, 2019
282019
LEMMI: A continuous benchmarking platform for metagenomics classifiers
M Seppey, M Manni, EM Zdobnov
Genome Research, gr. 260398.119, 2020
21*2020
Advancing Genomics with OrthoDB, BUSCO, and the LEM Framework
EV Kriventseva, M Manni, M Seppey, F Tegenfeldt, M Berkeley, ...
4th Belgrade Bioinformatics Conference 4, 31-31, 2023
2023
Benchmarking in (meta-) genomics: LEMMI & BUSCO
M Seppey
University of Geneva, 2020
2020
המערכת אינה יכולה לבצע את הפעולה כעת. נסה שוב מאוחר יותר.
מאמרים 1–15