| A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation S Ke, EA Alemu, C Mertens, EC Gantman, JJ Fak, A Mele, B Haripal, ... Genes & development 29 (19), 2037-2053, 2015 | 739 | 2015 |
| miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity MJ Moore, TKH Scheel, JM Luna, CY Park, JJ Fak, E Nishiuchi, CM Rice, ... Nature communications 6 (1), 8864, 2015 | 327 | 2015 |
| Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk J Zhou*, CY Park*, CL Theesfeld*, AK Wong, Y Yuan, C Scheckel, JJ Fak, ... Nature genetics 51 (6), 973-980, 2019 | 271 | 2019 |
| Rapid and accurate peptide identification from tandem mass spectra CY Park, AA Klammer, L Kall, MJ MacCoss, WS Noble Journal of proteome research 7 (7), 3022-3027, 2008 | 233 | 2008 |
| Regulatory consequences of neuronal ELAV-like protein binding to coding and non-coding RNAs in human brain C Scheckel, E Drapeau, MA Frias, CY Park, J Fak, I Zucker-Scharff, Y Kou, ... Elife 5, e10421, 2016 | 146 | 2016 |
| ZFP36 RNA-binding proteins restrain T cell activation and anti-viral immunity MJ Moore, NE Blachere, JJ Fak, CY Park, K Sawicka, S Parveen, ... Elife 7, e33057, 2018 | 122 | 2018 |
| NOVA2-mediated RNA regulation is required for axonal pathfinding during development Y Saito, S Miranda-Rottmann, M Ruggiu, CY Park, JJ Fak, R Zhong, ... Elife 5, e14371, 2016 | 111 | 2016 |
| IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks AK Wong, CY Park, CS Greene, LA Bongo, Y Guan, OG Troyanskaya Nucleic acids research 40 (W1), W484-W490, 2012 | 106 | 2012 |
| FMRP has a cell-type-specific role in CA1 pyramidal neurons to regulate autism-related transcripts and circadian memory K Sawicka, CR Hale, CY Park, JJ Fak, JE Gresack, SJ Van Driesche, ... Elife 8, e46919, 2019 | 95 | 2019 |
| Statistical calibration of the SEQUEST XCorr function AA Klammer, CY Park, WS Noble Journal of proteome research 8 (4), 2106-2113, 2009 | 72 | 2009 |
| Functional knowledge transfer for high-accuracy prediction of under-studied biological processes CY Park, AK Wong, CS Greene, J Rowland, Y Guan, LA Bongo, ... PLoS computational biology 9 (3), e1002957, 2013 | 71 | 2013 |
| PAPERCLIP identifies microRNA targets and a role of CstF64/64tau in promoting non-canonical poly (A) site usage HW Hwang, CY Park, H Goodarzi, JJ Fak, A Mele, MJ Moore, Y Saito, ... Cell reports 15 (2), 423-435, 2016 | 70 | 2016 |
| cTag-PAPERCLIP reveals alternative polyadenylation promotes cell-type specific protein diversity and shifts Araf isoforms with microglia activation HW Hwang, Y Saito, CY Park, NE Blachère, Y Tajima, JJ Fak, ... Neuron 95 (6), 1334-1349. e5, 2017 | 65 | 2017 |
| Interactive big data resource to elucidate human immune pathways and diseases D Gorenshteyn, E Zaslavsky, M Fribourg, CY Park, AK Wong, A Tadych, ... Immunity 43 (3), 605-614, 2015 | 64 | 2015 |
| Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk CY Park, J Zhou, AK Wong, KM Chen, CL Theesfeld, RB Darnell, ... Nature genetics 53 (2), 166-173, 2021 | 54 | 2021 |
| Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate C Iserman, C Roden, M Boerneke, R Sealfon, G McLaughlin, I Jungreis, ... BioRxiv, 2020 | 50 | 2020 |
| Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms CY Park, A Krishnan, Q Zhu, AK Wong, YS Lee, OG Troyanskaya Bioinformatics 31 (7), 1093-1101, 2015 | 45 | 2015 |
| An automated framework for efficiently designing deep convolutional neural networks in genomics Z Zhang, CY Park, CL Theesfeld, OG Troyanskaya Nature Machine Intelligence 3 (5), 392-400, 2021 | 43 | 2021 |
| Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components CY Park, DC Hess, C Huttenhower, OG Troyanskaya PLoS computational biology 6 (11), e1001009, 2010 | 34 | 2010 |
| Tissue-specific enhancer functional networks for associating distal regulatory regions to disease X Chen, J Zhou, R Zhang, AK Wong, CY Park, CL Theesfeld, ... Cell systems 12 (4), 353-362. e6, 2021 | 23 | 2021 |
