| Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape RI Sherwood, T Hashimoto, CW O'donnell, S Lewis, AA Barkal, ... Nature biotechnology 32 (2), 171-178, 2014 | 489 | 2014 |
| Aegis: A single-chip secure processor GE Suh, CW O'Donnell, S Devadas IEEE Design & Test of Computers 24 (6), 570-580, 2007 | 392 | 2007 |
| Differentiated human stem cells resemble fetal, not adult, β cells S Hrvatin, CW O’Donnell, F Deng, JR Millman, FW Pagliuca, P DiIorio, ... Proceedings of the National Academy of Sciences 111 (8), 3038-3043, 2014 | 355 | 2014 |
| Design and implementation of the AEGIS single-chip secure processor using physical random functions GE Suh, CW O'Donnell, I Sachdev, S Devadas 32nd International Symposium on Computer Architecture (ISCA'05), 25-36, 2005 | 330 | 2005 |
| Epigenomic profiling reveals an association between persistence of DNA methylation and metabolic memory in the DCCT/EDIC type 1 diabetes cohort Z Chen, F Miao, AD Paterson, JM Lachin, L Zhang, DE Schones, X Wu, ... Proceedings of the National Academy of Sciences 113 (21), E3002-E3011, 2016 | 213 | 2016 |
| Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins R Halfmann, S Alberti, R Krishnan, N Lyle, CW O'Donnell, OD King, ... Molecular cell 43 (1), 72-84, 2011 | 203 | 2011 |
| Virtual monotonic counters and count-limited objects using a TPM without a trusted OS LFG Sarmenta, M Van Dijk, CW O'Donnell, J Rhodes, S Devadas Proceedings of the first ACM workshop on Scalable trusted computing, 27-42, 2006 | 150 | 2006 |
| PUF-based random number generation CW O'Donnell, GE Suh, S Devadas | 120* | |
| MARIS: method for analyzing RNA following intracellular sorting S Hrvatin, F Deng, CW O'Donnell, DK Gifford, DA Melton PloS one 9 (3), e89459, 2014 | 113 | 2014 |
| A distant trophoblast-specific enhancer controls HLA-G expression at the maternal–fetal interface LMR Ferreira, TB Meissner, TS Mikkelsen, W Mallard, CW O’Donnell, ... Proceedings of the National Academy of Sciences 113 (19), 5364-5369, 2016 | 88 | 2016 |
| A method for probing the mutational landscape of amyloid structure CW O'Donnell, J Waldispühl, M Lis, R Halfmann, S Devadas, S Lindquist, ... Bioinformatics 27 (13), i34-i42, 2011 | 77 | 2011 |
| A global sampling approach to designing and reengineering RNA secondary structures A Levin, M Lis, Y Ponty, CW O’Donnell, S Devadas, B Berger, ... Nucleic acids research 40 (20), 10041-10052, 2012 | 45 | 2012 |
| Information Leak in the Chord Lookup Protocol CW O'Donnell, V Vaikuntanathan | 41 | 2004 |
| Modeling ensembles of transmembrane β‐barrel proteins J Waldispühl, CW O'Donnell, S Devadas, P Clote, B Berger Proteins: Structure, Function, and Bioinformatics 71 (3), 1097-1112, 2008 | 37 | 2008 |
| Lynx: A programmatic SAT solver for the RNA-folding problem V Ganesh, CW O’donnell, M Soos, S Devadas, MC Rinard, ... Theory and Applications of Satisfiability Testing–SAT 2012: 15th …, 2012 | 36 | 2012 |
| STITCHER: Dynamic assembly of likely amyloid and prion β‐structures from secondary structure predictions AW Bryan Jr, CW O'Donnell, M Menke, LJ Cowen, S Lindquist, B Berger Proteins: Structure, Function, and Bioinformatics 80 (2), 410-420, 2012 | 27 | 2012 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 16 | 2020 |
| On the existence of hazard-free multi-level logic SM Nowick, CW O'Donnell Ninth International Symposium on Asynchronous Circuits and Systems, 2003 …, 2003 | 16 | 2003 |
| Proof of freshness: How to efficiently use an online single secure clock to secure shared untrusted memory M Van Dijk, LFG Sarmenta, CW O’Donnell, S Devadas Technical report, 2006 | 14 | 2006 |
| Learning biophysically-motivated parameters for alpha helix prediction B Gassend, CW O'Donnell, W Thies, A Lee, M Van Dijk, S Devadas BMC bioinformatics 8 (Suppl 5), S3, 2007 | 12* | 2007 |
