עקוב אחר
Jared Wilkening
Jared Wilkening
כתובת אימייל מאומתת בדומיין mcs.anl.gov
כותרת
צוטט על ידי
צוטט על ידי
שנה
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9, 1-8, 2008
39862008
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10702010
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes
EM Glass, J Wilkening, A Wilke, D Antonopoulos, F Meyer
Cold Spring Harbor Protocols 2010 (1), pdb. prot5368, 2010
3662010
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
A Wilke, T Harrison, J Wilkening, D Field, EM Glass, N Kyrpides, ...
BMC bioinformatics 13, 1-5, 2012
3332012
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE
KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ...
PLoS computational biology 8 (6), e1002541, 2012
962012
Using clouds for metagenomics: a case study
J Wilkening, A Wilke, N Desai, F Meyer
2009 IEEE International Conference on Cluster Computing and Workshops, 1-6, 2009
912009
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS computational biology 11 (1), e1004008, 2015
862015
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
WL Trimble, KP Keegan, M D’Souza, A Wilke, J Wilkening, J Gilbert, ...
BMC bioinformatics 13, 1-10, 2012
552012
A scalable data analysis platform for metagenomics
W Tang, J Wilkening, N Desai, W Gerlach, A Wilke, F Meyer
2013 IEEE International Conference on Big Data, 21-26, 2013
442013
Connecting genotype to phenotype in the era of high-throughput sequencing
CS Henry, R Overbeek, F Xia, AA Best, E Glass, J Gilbert, P Larsen, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1810 (10), 967-977, 2011
442011
A metagenomics portal for a democratized sequencing world
A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D’Souza, ...
Methods in Enzymology 531, 487-523, 2013
222013
An experience report: porting the MG‐RAST rapid metagenomics analysis pipeline to the cloud
A Wilke, J Wilkening, EM Glass, NL Desai, F Meyer
Concurrency and Computation: Practice and Experience 23 (17), 2250-2257, 2011
172011
MG-RAST technical report and manual for version 3.3. 6–Rev 1
A Wilke, E Glass, J Bischof, D Braithwaite, M Souza, W Gerlach
Lemont, IL: Argonne National Laboratory, 2013
122013
& Edwards, RA (2008). The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9 (1), 1-8, 2008
112008
Shock: active storage for multicloud streaming data analysis
J Bischof, A Wilke, W Gerlach, T Harrison, T Paczian, W Tang, W Trimble, ...
2015 IEEE/ACM 2nd International Symposium on Big Data Computing (BDC), 68-72, 2015
92015
MG-RAST Manural for version 3.6, revision 3
A Wilke, EM Glass, J Bischof, D Braithwaite, W Gerlach, T Harrison, ...
MGRAST, 2015
72015
Report of the 13th Genomic Standards Consortium Meeting, Shenzhen, China, March 4–7, 2012
JA Gilbert, Y Bao, H Wang, SA Sansone, SC Edmunds, N Morrison, ...
Standards in genomic sciences 6, 276-286, 2012
32012
Building scalable data management and analysis infrastructure for metagenomics
W Tang, J Wilkening, J Bischof, W Gerlach, A Wilke, N Desai, F Meyer
5th International Workshop on Data-Intensive Computing in the Clouds, Poster …, 2013
22013
Molecular methods for biofilms
I Ferrera, V Balagué, CR Voolstra, M Aranda, T Bayer, RMM Abed, ...
Biofouling Methods, 87-137, 2014
12014
North American soil metagenomes cluster by ecosystem type and edaphic factors
DA Antonopoulos, SL O’Brien, KP Keegan, A Amarr, BS Bates, JM Brulc, ...
Science (in preparation), 0
1
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