Namita T Gupta
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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
NT Gupta, JA Vander Heiden, M Uduman, D Gadala-Maria, G Yaari, ...
Bioinformatics 31 (20), 3356-3358, 2015
Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data
G Yaari, JA Vander Heiden, M Uduman, D Gadala-Maria, N Gupta, ...
Frontiers in immunology 4, 2013
Salmonella infection drives promiscuous B cell activation followed by extrafollicular affinity maturation
R Di Niro, SJ Lee, JA Vander Heiden, RA Elsner, N Trivedi, JM Bannock, ...
Immunity 43 (1), 120-131, 2015
Interleukin-10 from CD4+ follicular regulatory T cells promotes the germinal center response
BJ Laidlaw, Y Lu, RA Amezquita, JS Weinstein, JA Vander Heiden, ...
Sci Immunol 2 (16), eaan4767, 2017
Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data
NT Gupta, KD Adams, AW Briggs, SC Timberlake, F Vigneault, ...
The Journal of Immunology 198 (6), 2489-2499, 2017
Neoadjuvant cemiplimab for resectable hepatocellular carcinoma: a single-arm, open-label, phase 2 trial
TU Marron, MI Fiel, P Hamon, N Fiaschi, E Kim, SC Ward, Z Zhao, J Kim, ...
The Lancet Gastroenterology & Hepatology 7 (3), 219-229, 2022
Neutralizing antibodies against West Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing
K Tsioris, NT Gupta, AO Ogunniyi, RM Zimnisky, F Qian, Y Yao, X Wang, ...
Integrative Biology 7 (12), 1587-1597, 2015
Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma
A Magen, P Hamon, N Fiaschi, BY Soong, MD Park, R Mattiuz, E Humblin, ...
Nature medicine 29 (6), 1389-1399, 2023
A framework for highly multiplexed dextramer mapping and prediction of T cell receptor sequences to antigen specificity
W Zhang, PG Hawkins, J He, NT Gupta, J Liu, G Choonoo, SW Jeong, ...
Science advances 7 (20), eabf5835, 2021
DDX17 (P72), a Sox2 binding partner, promotes stem-like features conferred by Sox2 in a small cell population in estrogen receptor-positive breast cancer
H Alqahtani, K Gopal, N Gupta, K Jung, A Alshareef, X Ye, F Wu, L Li, ...
Cellular signalling 28 (2), 42-50, 2016
Responsive population dynamics and wide seeding into the duodenal lamina propria of transglutaminase-2-specific plasma cells in celiac disease
R Di Niro, O Snir, K Kaukinen, G Yaari, KEA Lundin, NT Gupta, ...
Mucosal immunology 9 (1), 254-264, 2016
Endogenous retroviral proteins provide an immunodominant but not requisite antigen in a murine immunotherapy tumor model
X Ye, JC Waite, A Dhanik, N Gupta, M Zhong, C Adler, E Malahias, M Ni, ...
Oncoimmunology 9 (1), 1758602, 2020
Cancer cell-derived type I interferons instruct tumor monocyte polarization
D Kwart, J He, S Srivatsan, C Lett, J Golubov, EM Oswald, P Poon, X Ye, ...
Cell Reports 41 (10), 2022
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements
IT Toby, MK Levin, EA Salinas, S Christley, S Bhattacharya, F Breden, ...
BMC bioinformatics 17, 5-14, 2016
Intratumoral mregDC and CXCL13 T helper niches enable local differentiation of CD8 T cells following PD-1 blockade
A Magen, P Hamon, N Fiaschi, L Troncoso, E Humblin, D D’souza, ...
BioRxiv, 2022.06. 22.497216, 2022
Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses
AA Benitez, S Khalil-AgŁero, A Nandakumar, NT Gupta, W Zhang, ...
Communications Biology 3 (1), 355, 2020
Human CD4 cytotoxic T lymphocytes mediate potent tumor control in humanized immune system mice
W Lin, V Singh, R Springer, G Choonoo, N Gupta, A Patel, D Frleta, ...
Communications Biology 6 (1), 447, 2023
Systems and methods for sequencing T cell receptors and uses thereof
W Zhang, B Wang, N Gupta
US Patent 11,274,342, 2022
Hypoxia Induces the Acquisition of Cancer Stem-like Phenotype Via Upregulation and Activation of Signal Transducer and Activator of Transcription-3 (STAT3) in MDA-MB-231, a†…
N Gupta, A Alshareef, K Gopal, A Lavasanifar, R Lai
Cancer Microenvironment: Official Journal of the International Cancer†…, 2018
Graded vector representations of immunoglobulins produced in response to west Nile virus
T Cohen, D Widdows, JAV Heiden, NT Gupta, SH Kleinstein
Quantum Interaction: 10th International Conference, QI 2016, San Francisco†…, 2017
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