| Small-world view of the amino acids that play a key role in protein folding M Vendruscolo, NV Dokholyan, E Paci, M Karplus Physical Review E 65 (6), 061910, 2002 | 400 | 2002 |
| Phenylalanine-508 mediates a cytoplasmic–membrane domain contact in the CFTR 3D structure crucial to assembly and channel function AWR Serohijos, T Hegedűs, AA Aleksandrov, L He, L Cui, NV Dokholyan, ... Proceedings of the National Academy of Sciences 105 (9), 3256-3261, 2008 | 395 | 2008 |
| Eris: an automated estimator of protein stability S Yin, F Ding, NV Dokholyan Nature methods 4 (6), 466-467, 2007 | 348 | 2007 |
| Topological determinants of protein folding NV Dokholyan, L Li, F Ding, EI Shakhnovich Proceedings of the National Academy of Sciences 99 (13), 8637-8641, 2002 | 322 | 2002 |
| Discrete molecular dynamics studies of the folding of a protein-like model NV Dokholyan, SV Buldyrev, HE Stanley, EI Shakhnovich Folding and design 3 (6), 577-587, 1998 | 317 | 1998 |
| Mechanism for the α‐helix to β‐hairpin transition F Ding, JM Borreguero, SV Buldyrey, HE Stanley, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 53 (2), 220-228, 2003 | 266 | 2003 |
| Potentiator ivacaftor abrogates pharmacological correction of ΔF508 CFTR in cystic fibrosis DM Cholon, NL Quinney, ML Fulcher, CR Esther, J Das, NV Dokholyan, ... Science translational medicine 6 (246), 246ra96-246ra96, 2014 | 262 | 2014 |
| Ab initio folding of proteins with all-atom discrete molecular dynamics F Ding, D Tsao, H Nie, NV Dokholyan Structure 16 (7), 1010-1018, 2008 | 262 | 2008 |
| Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms F Ding, S Sharma, P Chalasani, VV Demidov, NE Broude, NV Dokholyan Rna 14 (6), 1164-1173, 2008 | 248 | 2008 |
| Molecular dynamics simulation of amyloid β dimer formation B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ... Biophysical journal 87 (4), 2310-2321, 2004 | 231 | 2004 |
| RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... Rna 18 (4), 610-625, 2012 | 205 | 2012 |
| Emergence of protein fold families through rational design F Ding, NV Dokholyan PLoS Comput Biol 2 (7), e85, 2006 | 204 | 2006 |
| Analysis of DNA sequences using methods of statistical physics SV Buldyrev, NV Dokholyan, AL Goldberger, S Havlin, CK Peng, ... Physica A: Statistical Mechanics and its Applications 249 (1-4), 430-438, 1998 | 198 | 1998 |
| iFoldRNA: three-dimensional RNA structure prediction and folding S Sharma, F Ding, NV Dokholyan Bioinformatics 24 (17), 1951-1952, 2008 | 196 | 2008 |
| Automated minimization of steric clashes in protein structures S Ramachandran, P Kota, F Ding, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 79 (1), 261-270, 2011 | 192 | 2011 |
| Expanding protein universe and its origin from the biological Big Bang NV Dokholyan, B Shakhnovich, EI Shakhnovich Proceedings of the National Academy of Sciences 99 (22), 14132-14136, 2002 | 191 | 2002 |
| Engineered allosteric activation of kinases in living cells AV Karginov, F Ding, P Kota, NV Dokholyan, KM Hahn Nature biotechnology 28 (7), 743-747, 2010 | 180 | 2010 |
| Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism F Ding, NV Dokholyan, SV Buldyrev, HE Stanley, EI Shakhnovich Journal of molecular biology 324 (4), 851-857, 2002 | 177 | 2002 |
| Understanding hierarchical protein evolution from first principles NV Dokholyan, EI Shakhnovich Journal of molecular biology 312 (1), 289-307, 2001 | 169 | 2001 |
| The rate and equilibrium constants for a multistep reaction sequence for the aggregation of superoxide dismutase in amyotrophic lateral sclerosis SD Khare, M Caplow, NV Dokholyan Proceedings of the National Academy of Sciences 101 (42), 15094-15099, 2004 | 164 | 2004 |
Feng DingClemson UniversityVerified email at clemson.edu
