| HyPhy: hypothesis testing using phylogenies SL Pond, SD Frost, SV Muse Bioinformatics 21, 676-679, 2005 | 2680 | 2005 |
| Not so different after all: a comparison of methods for detecting amino acid sites under selection SLK Pond, SDW Frost Molecular Biology and Evolution 22 (5), 1208-1222, 2005 | 1578 | 2005 |
| Datamonkey: rapid detection of selective pressure on individual sites of codon alignments SLK Pond, SDW Frost Bioinformatics 21 (10), 2531-2533, 2005 | 1261 | 2005 |
| Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology W Delport, AFY Poon, SDW Frost, SLK Pond Bioinformatics 26 (19), 2455-2457, 2010 | 1079 | 2010 |
| Automated phylogenetic detection of recombination using a genetic algorithm SLK Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Molecular biology and evolution 23 (10), 1891-1901, 2006 | 776 | 2006 |
| GARD: a genetic algorithm for recombination detection SL Kosakovsky Pond, D Posada, MB Gravenor, CH Woelk, SDW Frost Bioinformatics 22 (24), 3096-3098, 2006 | 623 | 2006 |
| A random effects branch-site model for detecting episodic diversifying selection SLK Pond, B Murrell, M Fourment, SDW Frost, W Delport, K Scheffler Molecular biology and evolution 28 (11), 3033-3043, 2011 | 387 | 2011 |
| Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection SDW Frost, T Wrin, DM Smith, SLK Pond, Y Liu, E Paxinos, C Chappey, ... Proceedings of the National Academy of Sciences of the United States of …, 2005 | 367 | 2005 |
| Modeling infectious disease dynamics in the complex landscape of global health H Heesterbeek, RM Anderson, V Andreasen, S Bansal, D De Angelis, ... Science 347 (6227), aaa4339, 2015 | 332 | 2015 |
| Evaluation of respondent-driven sampling N McCreesh, SDW Frost, J Seeley, J Katongole, MN Tarsh, R Ndunguse, ... Epidemiology 23 (1), 138, 2012 | 250 | 2012 |
| Adaptation to different human populations by HIV-1 revealed by codon-based analyses SL Kosakovsky Pond, SDW Frost, Z Grossman, MB Gravenor, ... PLoS Comput Biol 2 (6), e62, 2006 | 240 | 2006 |
| Persistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection SJ Little, SDW Frost, JK Wong, DM Smith, SLK Pond, CC Ignacio, ... Journal of virology 82 (11), 5510-5518, 2008 | 236 | 2008 |
| Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy HF Günthard, SDW Frost, AJ Leigh-Brown, CC Ignacio, K Kee, ... Journal of virology 73 (11), 9404-9412, 1999 | 236 | 1999 |
| A genetic algorithm approach to detecting lineage-specific variation in selection pressure SLK Pond, SDW Frost Molecular biology and evolution 22 (3), 478-485, 2005 | 213 | 2005 |
| Transmission fitness of drug-resistant human immunodeficiency virus and the prevalence of resistance in the antiretroviral-treated population AJL Brown, SDW Frost, WC Mathews, K Dawson, NS Hellmann, ES Daar, ... Journal of Infectious Diseases 187 (4), 683-686, 2003 | 205 | 2003 |
| Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B SDW Frost, Y Liu, SLK Pond, C Chappey, T Wrin, CJ Petropoulos, ... Journal of virology 79 (10), 6523-6527, 2005 | 194 | 2005 |
| Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection SDW Frost, M Nijhuis, R Schuurman, CAB Boucher, AJL Brown Journal of virology 74 (14), 6262-6268, 2000 | 187 | 2000 |
| HIV dynamics and T-cell immunity after three structured treatment interruptions in chronic HIV-1 infection L Ruiz, G Carcelain, J Martínez-Picado, S Frost, S Marfil, R Paredes, ... Aids 15 (9), F19-F27, 2001 | 176 | 2001 |
| Respondent-driven sampling of injection drug users in two US–Mexico border cities: Recruitment dynamics and impact on estimates of HIV and syphilis prevalence SDW Frost, KC Brouwer, MAF Cruz, R Ramos, ME Ramos, RM Lozada, ... Journal of Urban Health 83 (1), 83-97, 2006 | 171 | 2006 |
| Phylodynamics of infectious disease epidemics EM Volz, SLK Pond, MJ Ward, AJL Brown, SDW Frost Genetics 183 (4), 1421-1430, 2009 | 168 | 2009 |
Sergei L Kosakovsky PondProfessor of Biology, Institute for Genomics and Evolutionary Medicine, Temple UniversityVerified email at temple.edu
