Paul J. Atzberger
Paul J. Atzberger
Professor of Mathematics and Mechanical Engineering, University of California Santa Barbara
Verified email at - Homepage
Cited by
Cited by
Micromagnetic selection of aptamers in microfluidic channels
X Lou, J Qian, Y Xiao, L Viel, AE Gerdon, ET Lagally, P Atzberger, ...
Proceedings of the National Academy of Sciences 106 (9), 2989-2994, 2009
A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales
PJ Atzberger, PR Kramer, CS Peskin
Journal of Computational Physics 224 (2), 1255-1292, 2007
Stochastic Eulerian Lagrangian methods for fluid-structure interactions with thermal fluctuations
PJ Atzberger
Journal of Computational Physics, 2011
Hybrid elastic and discrete-particle approach to biomembrane dynamics with application to the mobility of curved integral membrane proteins
A Naji, PJ Atzberger, FLH Brown
Physical review letters 102 (13), 138102, 2009
Shape matters in protein mobility within membranes
D Quemeneur, F., Sigurdsson, J.K., Renner, M. , Atzberger, P.J. , Bassereau ...
Proceedings of the National Academy of Sciences 11 (14), 5083–5087, 2014
Influence of target concentration and background binding on in vitro selection of affinity reagents
J Wang, JF Rudzinski, Q Gong, HT Soh, PJ Atzberger
PLoS One 7 (8), e43940, 2012
Spectral analysis methods for the robust measurement of the flexural rigidity of biopolymers
D Valdman, PJ Atzberger, D Yu, S Kuei, MT Valentine
Biophysical journal 102 (5), 1144-1153, 2012
Spatially adaptive stochastic numerical methods for intrinsic fluctuations in reaction–diffusion systems
PJ Atzberger
Journal of Computational Physics 229 (9), 3474-3501, 2010
A Brownian dynamics model of kinesin in three dimensions incorporating the force-extension profile of the coiled-coil cargo tether
PJ Atzberger, CS Peskin
Bulletin of mathematical biology 68 (1), 131, 2006
A note on the correspondence of an immersed boundary method incorporating thermal fluctuations with Stokesian–Brownian dynamics
PJ Atzberger
Physica D: Nonlinear Phenomena 226 (2), 144-150, 2007
Hybrid continuum-particle method for fluctuating lipid bilayer membranes with diffusing protein inclusions
JK Sigurdsson, FLH Brown, PJ Atzberger
Journal of Computational Physics 252, 65-85, 2013
Dynamic implicit-solvent coarse-grained models of lipid bilayer membranes: Fluctuating hydrodynamics thermostat
Y Wang, JK Sigurdsson, E Brandt, PJ Atzberger
Physical Review E 88 (2), 023301, 2013
On the foundations of the stochastic immersed boundary method
PR Kramer, CS Peskin, PJ Atzberger
Computer Methods in Applied Mechanics and Engineering 197 (25-28), 2232-2249, 2008
Velocity correlations of a thermally fluctuating Brownian particle: A novel model of the hydrodynamic coupling
PJ Atzberger
Physics Letters A 351 (4-5), 225-230, 2006
Experimental study of the separation behavior of nanoparticles in micro-and nanochannels
M Napoli, P Atzberger, S Pennathur
Microfluidics and Nanofluidics 10 (1), 69-80, 2011
Hydrodynamic coupling of particle inclusions embedded in curved lipid bilayer membranes
JK Sigurdsson, PJ Atzberger
Soft Matter 12 (32), 6685-6707, 2016
Förster resonance energy transfer: Role of diffusion of fluorophore orientation and separation in observed shifts of FRET efficiency
B Wallace, PJ Atzberger
PloS one 12 (5), e0177122, 2017
Spatially adaptive stochastic methods for fluid–structure interactions subject to thermal fluctuations in domains with complex geometries
P Plunkett, J Hu, C Siefert, PJ Atzberger
Journal of Computational Physics 277, 121-137, 2014
Stochastic reduction method for biological chemical kinetics using time-scale separation
CD Pahlajani, PJ Atzberger, M Khammash
Journal of theoretical biology 272 (1), 96-112, 2011
A first-passage kinetic Monte Carlo method for reaction–drift–diffusion processes
AJ Mauro, JK Sigurdsson, J Shrake, PJ Atzberger, SA Isaacson
Journal of Computational Physics 259, 536-567, 2014
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