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William S. Hlavacek
William S. Hlavacek
Theoretical Division, Los Alamos National Laboratory
Verified email at lanl.gov - Homepage
Title
Cited by
Cited by
Year
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1
DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ...
autophagy 17 (1), 1-382, 2021
88442021
Rule-based modeling of biochemical systems with BioNetGen
JR Faeder, ML Blinov, WS Hlavacek
Methods Mol Biol 500, 113-167, 2009
5052009
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains
ML Blinov, JR Faeder, B Goldstein, WS Hlavacek
Bioinformatics 20 (17), 3289-3291, 2004
4792004
Rules for modeling signal-transduction systems
WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana
Science's STKE 2006 (344), re6-re6, 2006
4382006
Design of gene circuits: lessons from bacteria
ME Wall, WS Hlavacek, MA Savageau
Nature Reviews Genetics 5 (1), 34-42, 2004
2612004
Mathematical and computational models of immune-receptor signalling
B Goldstein, JR Faeder, WS Hlavacek
Nature Reviews Immunology 4 (6), 445-456, 2004
2422004
The complexity of complexes in signal transduction
WS Hlavacek, JR Faeder, ML Blinov, AS Perelson, B Goldstein
Biotechnology and bioengineering 84 (7), 783-794, 2003
2372003
Investigation of early events in FcεRI-mediated signaling using a detailed mathematical model
JR Faeder, WS Hlavacek, I Reischl, ML Blinov, H Metzger, A Redondo, ...
The Journal of Immunology 170 (7), 3769-3781, 2003
2092003
A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity
ML Blinov, JR Faeder, B Goldstein, WS Hlavacek
Biosystems 83 (2-3), 136-151, 2006
1972006
Rule‐based modeling of biochemical networks
JR Faeder, ML Blinov, B Goldstein, WS Hlavacek
Complexity 10 (4), 22-41, 2005
1662005
Rules for coupled expression of regulator and effector genes in inducible circuits
WS Hlavacek, MA Savageau
Journal of molecular biology 255 (1), 121-139, 1996
1501996
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
1432014
Steric effects on multivalent ligand-receptor binding: exclusion of ligand sites by bound cell surface receptors
WS Hlavacek, RG Posner, AS Perelson
Biophysical journal 76 (6), 3031-3043, 1999
1411999
Kinetic Monte Carlo method for rule-based modeling of biochemical networks
J Yang, MI Monine, JR Faeder, WS Hlavacek
Physical Review E 78 (3), 031910, 2008
1382008
Graph theory for rule-based modeling of biochemical networks
ML Blinov, J Yang, JR Faeder, WS Hlavacek
Lect Notes Comput Sci 4230, 89-106, 2006
1042006
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1032020
Mitochondrial morphological features are associated with fission and fusion events
LM Westrate, JA Drocco, KR Martin, WS Hlavacek, JP MacKeigan
PloS one 9 (4), e95265, 2014
982014
Stochastic effects and bistability in T cell receptor signaling
T Lipniacki, B Hat, JR Faeder, WS Hlavacek
Journal of theoretical Biology 254 (1), 110-122, 2008
942008
Multiple functions of a feed-forward-loop gene circuit
ME Wall, MJ Dunlop, WS Hlavacek
Journal of molecular biology 349 (3), 501-514, 2005
942005
Influence of follicular dendritic cells on decay of HIV during antiretroviral therapy
WS Hlavacek, NI Stilianakis, DW Notermans, SA Danner, AS Perelson
Proceedings of the National Academy of Sciences 97 (20), 10966-10971, 2000
902000
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Articles 1–20