Pao-Yang Chen
Pao-Yang Chen
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Conservation and divergence of methylation patterning in plants and animals
S Feng, SJ Cokus, X Zhang, PY Chen, M Bostick, MG Goll, J Hetzel, J Jain, ...
Proceedings of the National Academy of Sciences 107 (19), 8689-8694, 2010
Relationship between nucleosome positioning and DNA methylation
RK Chodavarapu, S Feng, YV Bernatavichute, PY Chen, H Stroud, Y Yu, ...
Nature 466 (7304), 388-392, 2010
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
S Atsumi, TY Wu, IMP Machado, WC Huang, PY Chen, M Pellegrini, ...
Molecular systems biology 6 (1), 449, 2010
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
W Guo, P Fiziev, W Yan, S Cokus, X Sun, MQ Zhang, PY Chen, ...
BMC genomics 14 (1), 1-8, 2013
DNA demethylation dynamics in the human prenatal germline
S Gkountela, KX Zhang, TA Shafiq, WW Liao, J Hargan-Calvopiña, ...
Cell 161 (6), 1425-1436, 2015
BS Seeker: precise mapping for bisulfite sequencing
PY Chen, SJ Cokus, M Pellegrini
BMC bioinformatics 11 (1), 1-6, 2010
Profiling genome-wide DNA methylation
WS Yong, FM Hsu, PY Chen
Epigenetics & chromatin 9 (1), 1-16, 2016
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells
JJ Vincent, Y Huang, PY Chen, S Feng, JH Calvopiña, K Nee, SA Lee, ...
Cell stem cell 12 (4), 470-478, 2013
A comparative analysis of DNA methylation across human embryonic stem cell lines
PY Chen, S Feng, JWJ Joo, SE Jacobsen, M Pellegrini
Genome biology 12 (7), 1-12, 2011
Intrauterine calorie restriction affects placental DNA methylation and gene expression
PY Chen, A Ganguly, L Rubbi, LD Orozco, M Morselli, D Ashraf, ...
Physiological genomics 45 (14), 565-576, 2013
The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging
NM Ghahramani, TC Ngun, PY Chen, Y Tian, S Krishnan, S Muir, L Rubbi, ...
Biology of sex differences 5 (1), 1-18, 2014
Lung adenocarcinoma and human papillomavirus infection
YC Chen, JH Chen, K Richard, PY Chen, DC Christiani
Cancer: Interdisciplinary International Journal of the American Cancer …, 2004
Deciphering chemotaxis pathways using cross species comparisons
R Hamer, PY Chen, JP Armitage, G Reinert, CM Deane
BMC systems biology 4 (1), 1-19, 2010
Stage-specific demethylation in primordial germ cells safeguards against precocious differentiation
J Hargan-Calvopina, S Taylor, H Cook, Z Hu, SA Lee, MR Yen, ...
Developmental cell 39 (1), 75-86, 2016
Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development
JY Lin, BH Le, M Chen, KF Henry, J Hur, TF Hsieh, PY Chen, JM Pelletier, ...
Proceedings of the National Academy of Sciences 114 (45), E9730-E9739, 2017
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
B Montanini, PY Chen, M Morselli, A Jaroszewicz, D Lopez, F Martin, ...
Genome biology 15 (8), 1-16, 2014
Predicting and validating protein interactions using network structure
PY Chen, CM Deane, G Reinert
PLoS computational biology 4 (7), e1000118, 2008
Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi
PN Tran, MR Yen, CY Chiang, HC Lin, PY Chen
Applied microbiology and biotechnology 103 (8), 3277-3287, 2019
Prenatal growth patterns and birthweight are associated with differential DNA methylation and gene expression of cardiometabolic risk genes in human placentas: a discovery …
PY Chen, A Chu, WW Liao, L Rubbi, C Janzen, FM Hsu, S Thamotharan, ...
Reproductive Sciences 25 (4), 523-539, 2018
Physical inactivity is an important lifestyle determinant of insulin resistance in hypertensive patients
CM Hwu, CF Hsiao, SW Kuo, KD Wu, CT Ting, T Quertermous, ...
Blood pressure 13 (6), 355-361, 2004
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