Melissa J Davis
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The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Visualising associations between paired ‘omics’ data sets
I González, KA Lę Cao, MJ Davis, S Déjean
BioData mining 5 (1), 1-23, 2012
Supervised, semi-supervised and unsupervised inference of gene regulatory networks
SR Maetschke, PB Madhamshettiwar, MJ Davis, MA Ragan
Briefings in bioinformatics 15 (2), 195-211, 2014
Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets
PB Madhamshettiwar, SR Maetschke, MJ Davis, A Reverter, MA Ragan
Genome medicine 4 (5), 1-16, 2012
Identifying the molecular phenotype of renal progenitor cells
GA Challen, G Martinez, MJ Davis, DF Taylor, M Crowe, RD Teasdale, ...
Journal of the American Society of Nephrology 15 (9), 2344-2357, 2004
Structure-based reassessment of the caveolin signaling model: do caveolae regulate signaling through caveolin-protein interactions?
BM Collins, MJ Davis, JF Hancock, RG Parton
Developmental cell 23 (1), 11-20, 2012
Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling
B Pal, Y Chen, F Vaillant, P Jamieson, L Gordon, AC Rios, S Wilcox, N Fu, ...
Nature communications 8 (1), 1-14, 2017
FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group). The transcriptional landscape of the mammalian genome
P Carninci
Science 309, 1559-1563, 2005
Mouse proteome analysis
A Kanapin, S Batalov, MJ Davis, J Gough, S Grimmond, H Kawaji, ...
Genome research 13 (6b), 1335-1344, 2003
LOCATE: a mouse protein subcellular localization database
JL Fink, RN Aturaliya, MJ Davis, F Zhang, K Hanson, MS Teasdale, C Kai, ...
Nucleic Acids Research 34 (suppl_1), D213-D217, 2006
Single sample scoring of molecular phenotypes
M Foroutan, DD Bhuva, R Lyu, K Horan, J Cursons, MJ Davis
BMC bioinformatics 19 (1), 1-10, 2018
Research resource: nuclear receptors as transcriptome: discriminant and prognostic value in breast cancer
GEO Muscat, NA Eriksson, K Byth, S Loi, D Graham, S Jindal, MJ Davis, ...
Molecular endocrinology 27 (2), 350-365, 2013
A gene signature predicting natural killer cell infiltration and improved survival in melanoma patients
J Cursons, F Souza-Fonseca-Guimaraes, M Foroutan, A Anderson, ...
Cancer immunology research 7 (7), 1162-1174, 2019
Annotated genes and nonannotated genomes: cross‐species use of Gene Ontology in ecology and evolution research
CR Primmer, S Papakostas, EH Leder, MJ Davis, MA Ragan
Molecular ecology 22 (12), 3216-3241, 2013
The mouse secretome: functional classification of the proteins secreted into the extracellular environment
SM Grimmond, KC Miranda, Z Yuan, MJ Davis, DA Hume, K Yagi, ...
Genome research 13 (6b), 1350-1359, 2003
Protein-protein interaction as a predictor of subcellular location
CJ Shin, S Wong, MJ Davis, MA Ragan
BMC systems biology 3 (1), 1-20, 2009
Expression of PTRF in PC-3 Cells modulates cholesterol dynamics and the actin cytoskeleton impacting secretion pathways
KL Inder, YZ Zheng, MJ Davis, H Moon, D Loo, H Nguyen, JA Clements, ...
Molecular & Cellular Proteomics 11 (2), 2012
Gene Ontology-driven inference of protein–protein interactions using inducers
SR Maetschke, M Simonsen, MJ Davis, MA Ragan
Bioinformatics 28 (1), 69-75, 2012
Sleeping Beauty mutagenesis in a mouse medulloblastoma model defines networks that discriminate between human molecular subgroups
LA Genovesi, CG Ng, MJ Davis, M Remke, MD Taylor, DJ Adams, ...
Proceedings of the National Academy of Sciences 110 (46), E4325-E4334, 2013
Combinatorial targeting by microRNAs co-ordinates post-transcriptional control of EMT
J Cursons, KA Pillman, KG Scheer, PA Gregory, M Foroutan, ...
Cell systems 7 (1), 77-91. e7, 2018
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