Jens Allmer
Jens Allmer
Medical Informatics and Bioinformatics, Hochschule Ruhr-West, University of Applied Sciences
Verified email at allmer.de
Title
Cited by
Cited by
Year
The Chlamydomonas genome reveals the evolution of key animal and plant functions
SS Merchant, SE Prochnik, O Vallon, EH Harris, SJ Karpowicz, ...
Science 318 (5848), 245-250, 2007
23472007
Comparative quantitative proteomics to investigate the remodeling of bioenergetic pathways under iron deficiency in Chlamydomonas reinhardtii
B Naumann, A Busch, J Allmer, E Ostendorf, M Zeller, H Kirchhoff, ...
Proteomics 7 (21), 3964-3979, 2007
1702007
Algorithms for the de novo sequencing of peptides from tandem mass spectra
J Allmer
Expert review of proteomics 8 (5), 645-657, 2011
1122011
Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in Chlamydomonas reinhardtii
J Allmer, B Naumann, C Markert, M Zhang, M Hippler
Proteomics 6 (23), 6207-6220, 2006
622006
Computational methods for microRNA target prediction
H Hamzeiy, J Allmer, M Yousef
miRNomics: MicroRNA Biology and Computational Analysis, 207-221, 2014
432014
EPO mediates neurotrophic, neuroprotective, anti-oxidant, and anti-apoptotic effects via downregulation of miR-451 and miR-885-5p in SH-SY5Y neuron-like cells
B Alural, GA Duran, KU Tufekci, J Allmer, Z Onkal, D Tunali, K Genc, ...
Frontiers in immunology 5, 475, 2014
422014
Computational methods for ab initio detection of microRNAs
M Yousef, J Allmer
Frontiers in genetics 3, 209, 2012
372012
Computational prediction of microRNAs from Toxoplasma gondii potentially regulating the hosts’ gene expression
MD Saçar, C Bağcı, J Allmer
Genomics, proteomics & bioinformatics 12 (5), 228-238, 2014
352014
Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins?
MD Saçar, H Hamzeiy, J Allmer
Journal of integrative bioinformatics 10 (2), 1-11, 2013
352013
On the performance of pre-microRNA detection algorithms
MDS Demirci, J Baumbach, J Allmer
Nature communications 8 (1), 1-9, 2017
332017
Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells
B Alural, A Ozerdem, J Allmer, K Genc, S Genc
Frontiers in cellular neuroscience 9, 209, 2015
322015
One step forward, two steps back; xeno-microRNAs reported in breast milk are artifacts
C Bağcı, J Allmer
PLoS One 11 (1), e0145065, 2016
292016
miRNomics: microRNA biology and computational analysis
M Yousef, J Allmer
Humana Press, 2014
262014
A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases
J Allmer, C Markert, EJ Stauber, M Hippler
FEBS letters 562 (1-3), 202-206, 2004
262004
Machine learning methods for microRNA gene prediction
MD Saçar, J Allmer
miRNomics: MicroRNA Biology and Computational Analysis, 177-187, 2014
242014
Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame
AÖ Uncu, V Gultekin, J Allmer, A Frary, S Doganlar
The Plant Genome 8 (2), 1-12, 2015
202015
Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing
I Celik, V Gultekin, J Allmer, S Doganlar, A Frary
Molecular breeding 34 (2), 323-334, 2014
202014
Systematic computational analysis of potential RNAi regulation in Toxoplasma gondii
MV Çakir, J Allmer
2010 5th International Symposium on Health Informatics and Bioinformatics, 31-38, 2010
202010
Development of EST-SSR markers for diversity and breeding studies in opium poppy
H Selale, I Celik, V Gultekin, J Allmer, S Doganlar, A Frary
PLANT BREEDING 132 (3), 344-351, 2013
182013
MicroRNA categorization using sequence motifs and k-mers
M Yousef, W Khalifa, İE Acar, J Allmer
BMC bioinformatics 18 (1), 170, 2017
162017
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Articles 1–20