Jens Allmer

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	All	Since 2016
Citations	3593	1791
h-index	20	16
i10-index	34	30

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Prof. Malik YousefZefat Academic CollegeVerified email at gal-soc.org
Müşerref Duygu Saçar DemirciBiyoinformatik, Abdullah Gül ÜniversitesiVerified email at agu.edu.tr
Michael HipplerUniversity of Münster, IBBP, Schlossplatz 8Verified email at uni-muenster.de
Anne FraryIzmir Institute of TechnologyVerified email at iyte.edu.tr
sami doganlarProfessor of Molecular Biology and Genetics, Izmir Institute of TechnologyVerified email at iyte.edu.tr
Caner BağcıUniversity of TuebingenVerified email at uni-tuebingen.de
Helmut KirchhoffInstitute of Biological Chemistry, Washington State UniversityVerified email at wsu.edu
Hamid HamzeiyPostdoctoral Researcher, Computational Systems Biochemistry, Max-Planck Institute of BiochemistryVerified email at biochem.mpg.de
Mehmet GöktayMax Planck Institute for Plant Breeding Reasearch (PhD Candidate)Verified email at mpipz.mpg.de
Begum AluralMassachusetts General HospitalVerified email at mgh.harvard.edu
Şermin GENÇIzmir Biomedicine and Genome CenterVerified email at ibg.edu.tr
İlhan Erkin AcarPhD candidate at RadboudumcVerified email at radboudumc.nl
ibrahim ÇelikPhDVerified email at pau.edu.tr
Dalit LevyDepartment Head, Community Information System, Zefat Academic CollegeVerified email at zefat.ac.il
Hatice ŞelaleVerified email at iyte.edu.tr
Mehmet Volkan CakirRudolf-Schönheimer-Institute für BiochemieVerified email at medizin.uni-leipzig.de
Kemal Uğur TüfekciIzmir Demokrasi ÜniversitesiVerified email at idu.edu.tr
Ayşegül ÖzerdemDOKUZ EYLUL UNIVERSITYVerified email at deu.edu.tr
Jan BaumbachUniversity of HamburgVerified email at uni-hamburg.de
Sergey LashinInstitute of Cytology and Genetics SB RASVerified email at bionet.nsc.ru

Jens Allmer

Medical Informatics and Bioinformatics, Hochschule Ruhr-West, University of Applied Sciences

Verified email at allmer.de

Medical informatics bioinformatic workflow management


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The Chlamydomonas genome reveals the evolution of key animal and plant functions SS Merchant, SE Prochnik, O Vallon, EH Harris, SJ Karpowicz, ... Science 318 (5848), 245-250, 2007	2439	2007
Comparative quantitative proteomics to investigate the remodeling of bioenergetic pathways under iron deficiency in *Chlamydomonas reinhardtii* B Naumann, A Busch, J Allmer, E Ostendorf, M Zeller, H Kirchhoff, ... Proteomics 7 (21), 3964-3979, 2007	175	2007
Algorithms for the de novo sequencing of peptides from tandem mass spectra J Allmer Expert review of proteomics 8 (5), 645-657, 2011	117	2011
Mass spectrometric genomic data mining: Novel insights into bioenergetic pathways in *Chlamydomonas reinhardtii* J Allmer, B Naumann, C Markert, M Zhang, M Hippler Proteomics 6 (23), 6207-6220, 2006	60	2006
EPO mediates neurotrophic, neuroprotective, anti-oxidant, and anti-apoptotic effects via downregulation of miR-451 and miR-885-5p in SH-SY5Y neuron-like cells B Alural, GA Duran, KU Tufekci, J Allmer, Z Onkal, D Tunali, K Genc, ... Frontiers in immunology 5, 475, 2014	47	2014
Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells B Alural, A Ozerdem, J Allmer, K Genc, S Genc Frontiers in cellular neuroscience 9, 209, 2015	45	2015
Computational methods for microRNA target prediction H Hamzeiy, J Allmer, M Yousef miRNomics: MicroRNA Biology and Computational Analysis, 207-221, 2014	44	2014
On the performance of pre-microRNA detection algorithms MDS Demirci, J Baumbach, J Allmer Nature communications 8 (1), 1-9, 2017	38	2017
Computational methods for ab initio detection of microRNAs M Yousef, J Allmer Frontiers in genetics 3, 209, 2012	38	2012
Computational prediction of microRNAs from Toxoplasma gondii potentially regulating the hosts’ gene expression MD Saçar, C Bağcı, J Allmer Genomics, proteomics & bioinformatics 12 (5), 228-238, 2014	37	2014
Can MiRBase provide positive data for machine learning for the detection of MiRNA hairpins? MD Saçar, H Hamzeiy, J Allmer Journal of integrative bioinformatics 10 (2), 1-11, 2013	35	2013
One step forward, two steps back; xeno-microRNAs reported in breast milk are artifacts C Bağcı, J Allmer PLoS One 11 (1), e0145065, 2016	31	2016
Machine learning methods for microRNA gene prediction MD Saçar, J Allmer miRNomics: MicroRNA Biology and Computational Analysis, 177-187, 2014	31	2014
miRNomics: microRNA biology and computational analysis M Yousef, J Allmer Humana Press, 2014	27	2014
A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases J Allmer, C Markert, EJ Stauber, M Hippler FEBS letters 562 (1-3), 202-206, 2004	26	2004
Genomic simple sequence repeat markers reveal patterns of genetic relatedness and diversity in sesame AÖ Uncu, V Gultekin, J Allmer, A Frary, S Doganlar The Plant Genome 8 (2), plantgenome2014.11.0087, 2015	23	2015
Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing I Celik, V Gultekin, J Allmer, S Doganlar, A Frary Molecular breeding 34 (2), 323-334, 2014	22	2014
MicroRNA categorization using sequence motifs and k-mers M Yousef, W Khalifa, İE Acar, J Allmer BMC bioinformatics 18 (1), 1-9, 2017	20	2017
Development of EST-SSR markers for diversity and breeding studies in opium poppy H Selale, I Celik, V Gultekin, J Allmer, S Doganlar, A Frary	20	2013
Systematic computational analysis of potential RNAi regulation in Toxoplasma gondii MV Çakir, J Allmer 2010 5th International Symposium on Health Informatics and Bioinformatics, 31-38, 2010	20	2010

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