Alicia Oshlack

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonPostdoctoral Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Jovana MaksimovicPostdoctoral Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Matthew D YoungWellcome Sanger InstituteVerified email at sanger.ac.uk
Matthew WakefieldWalter & Eliza Hall Institute; Dept of Obstetrics and Gynaecology, Univ of MelbourneVerified email at wehi.edu.au
Mark D. RobinsonAssociate Professor of Statistical Genomics, University of ZurichVerified email at imls.uzh.ch
Luke ZappiaHelmholtz Zentrum München/Technische Universität MünchenVerified email at helmholtz-muenchen.de
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
Kynan LawlorMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Lavinia GordonUniversity of MelbourneVerified email at unimelb.edu.au
Matthew WhitingCSIRO Astronomy & Space ScienceVerified email at csiro.au
Alexander N CombesMonash Biomedicine Discovery Institute, Department of Anatomy and Developmental Biology, MonashVerified email at monash.edu
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Rachel WebsterUniversity of MelbourneVerified email at unimelb.edu.au
richard safferyVerified email at mcri.edu.au
Craig SmithAssociate Professor of Biology, Monash UniversityVerified email at monash.edu
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Katie AyersMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Harriet DashnowUniversity of UtahVerified email at genetics.utah.edu
Terence P SpeedThe Walter & Eliza Hall InstituteVerified email at wehi.edu.au

Alicia Oshlack

Peter MacCallum Cancer Centre

Verified email at petermac.org - Homepage

Bioinformatics RNA-seq scRNA-seq Cancer clinical genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A scaling normalization method for differential expression analysis of RNA-seq data MD Robinson, A Oshlack Genome biology 11 (3), 1-9, 2010	4732	2010
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome biology 11 (2), 1-12, 2010	3442	2010
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1019	2007
From RNA-seq reads to differential expression results A Oshlack, MD Robinson, MD Young Genome biology 11 (12), 1-10, 2010	784	2010
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips J Maksimovic, L Gordon, A Oshlack Genome biology 13 (6), 1-12, 2012	660	2012
Transcript length bias in RNA-seq data confounds systems biology A Oshlack, MJ Wakefield Biology direct 4 (1), 1-10, 2009	549	2009
Expression profiling in primates reveals a rapid evolution of human transcription factors Y Gilad, A Oshlack, GK Smyth, TP Speed, KP White Nature 440 (7081), 242-245, 2006	356	2006
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes NM Davidson, A Oshlack Genome biology 15 (7), 1-14, 2014	301	2014
Splatter: simulation of single-cell RNA sequencing data L Zappia, B Phipson, A Oshlack Genome biology 18 (1), 1-15, 2017	279	2017
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ... Nucleic acids research 39 (17), 7415-7427, 2011	267	2011
Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis SF Berkovic, LM Dibbens, A Oshlack, JD Silver, M Katerelos, DF Vears, ... The American Journal of Human Genetics 82 (3), 673-684, 2008	265	2008
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform B Phipson, J Maksimovic, A Oshlack Bioinformatics 32 (2), 286-288, 2016	263	2016
A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders Z Stark, TY Tan, B Chong, GR Brett, P Yap, M Walsh, A Yeung, H Peters, ... Genetics in Medicine 18 (11), 1090-1096, 2016	241	2016
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips W Shi, A Oshlack, GK Smyth Nucleic acids research 38 (22), e204-e204, 2010	211	2010
Natural selection on gene expression Y Gilad, A Oshlack, SA Rifkin TRENDS in Genetics 22 (8), 456-461, 2006	205	2006
Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort S Eggers, S Sadedin, JA Van Den Bergen, G Robevska, T Ohnesorg, ... Genome biology 17 (1), 1-21, 2016	176	2016
Diagnostic impact and cost-effectiveness of whole-exome sequencing for ambulant children with suspected monogenic conditions TY Tan, OJ Dillon, Z Stark, D Schofield, K Alam, R Shrestha, B Chong, ... JAMA pediatrics 171 (9), 855-862, 2017	175	2017
Gene regulation in primates evolves under tissue-specific selection pressures R Blekhman, A Oshlack, AE Chabot, GK Smyth, Y Gilad PLoS Genet 4 (11), e1000271, 2008	158	2008
Bpipe: a tool for running and managing bioinformatics pipelines SP Sadedin, B Pope, A Oshlack Bioinformatics 28 (11), 1525-1526, 2012	147	2012
Identification of recurrent FGFR3 fusion genes in lung cancer through kinome‐centred RNA sequencing IJ Majewski, L Mittempergher, NM Davidson, A Bosma, SM Willems, ... The Journal of pathology 230 (3), 270-276, 2013	126	2013

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