Alicia Oshlack

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonSenior Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Jovana MaksimovicSenior Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Matthew WakefieldWalter & Eliza Hall Institute; Dept of Obstetrics and Gynaecology, Univ of MelbourneVerified email at wehi.edu.au
Luke ZappiaHelmholtz Zentrum München/Technische Universität MünchenVerified email at helmholtz-muenchen.de
Mark D. RobinsonAssociate Professor of Statistical Genomics, University of ZurichVerified email at imls.uzh.ch
Matthew D YoungWellcome Sanger InstituteVerified email at sanger.ac.uk
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
Kynan LawlorMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Alexander N CombesMonash Biomedicine Discovery Institute, Department of Anatomy and Developmental Biology, MonashVerified email at monash.edu
Lavinia GordonUniversity of MelbourneVerified email at unimelb.edu.au
Matthew WhitingCSIRO Space & AstronomyVerified email at csiro.au
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Rachel WebsterUniversity of MelbourneVerified email at unimelb.edu.au
richard safferyVerified email at mcri.edu.au
Craig SmithAssociate Professor of Biology, Monash UniversityVerified email at monash.edu
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Harriet DashnowUniversity of UtahVerified email at genetics.utah.edu
Katie AyersMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Andrew LonsdaleThe University of MelbourneVerified email at student.unimelb.edu.au

Alicia Oshlack

Peter MacCallum Cancer Centre

Verified email at petermac.org - Homepage

Bioinformatics RNA-seq scRNA-seq Cancer clinical genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A scaling normalization method for differential expression analysis of RNA-seq data MD Robinson, A Oshlack Genome biology 11 (3), 1-9, 2010	5297	2010
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome biology 11 (2), 1-12, 2010	3889	2010
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1047	2007
From RNA-seq reads to differential expression results A Oshlack, MD Robinson, MD Young Genome biology 11 (12), 1-10, 2010	814	2010
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips J Maksimovic, L Gordon, A Oshlack Genome biology 13 (6), 1-12, 2012	709	2012
Transcript length bias in RNA-seq data confounds systems biology A Oshlack, MJ Wakefield Biology direct 4 (1), 1-10, 2009	576	2009
Expression profiling in primates reveals a rapid evolution of human transcription factors Y Gilad, A Oshlack, GK Smyth, TP Speed, KP White Nature 440 (7081), 242-245, 2006	365	2006
Splatter: simulation of single-cell RNA sequencing data L Zappia, B Phipson, A Oshlack Genome biology 18 (1), 1-15, 2017	344	2017
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes NM Davidson, A Oshlack Genome biology 15 (7), 1-14, 2014	338	2014
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform B Phipson, J Maksimovic, A Oshlack Bioinformatics 32 (2), 286-288, 2016	316	2016
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ... Nucleic acids research 39 (17), 7415-7427, 2011	283	2011
A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders Z Stark, TY Tan, B Chong, GR Brett, P Yap, M Walsh, A Yeung, H Peters, ... Genetics in Medicine 18 (11), 1090-1096, 2016	272	2016
Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis SF Berkovic, LM Dibbens, A Oshlack, JD Silver, M Katerelos, DF Vears, ... The American Journal of Human Genetics 82 (3), 673-684, 2008	268	2008
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips W Shi, A Oshlack, GK Smyth Nucleic acids research 38 (22), e204-e204, 2010	219	2010
Natural selection on gene expression Y Gilad, A Oshlack, SA Rifkin TRENDS in Genetics 22 (8), 456-461, 2006	216	2006
Diagnostic impact and cost-effectiveness of whole-exome sequencing for ambulant children with suspected monogenic conditions TY Tan, OJ Dillon, Z Stark, D Schofield, K Alam, R Shrestha, B Chong, ... JAMA pediatrics 171 (9), 855-862, 2017	200	2017
Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort S Eggers, S Sadedin, JA Van Den Bergen, G Robevska, T Ohnesorg, ... Genome biology 17 (1), 1-21, 2016	191	2016
Gene regulation in primates evolves under tissue-specific selection pressures R Blekhman, A Oshlack, AE Chabot, GK Smyth, Y Gilad PLoS genetics 4 (11), e1000271, 2008	162	2008
Bpipe: a tool for running and managing bioinformatics pipelines SP Sadedin, B Pope, A Oshlack Bioinformatics 28 (11), 1525-1526, 2012	155	2012
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database L Zappia, B Phipson, A Oshlack PLoS computational biology 14 (6), e1006245, 2018	152	2018

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