Alicia Oshlack

Cited by

	All	Since 2016
Citations	16234	11393
h-index	46	41
i10-index	72	67

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200620072008200920102011201220132014201520162017201820192020202145 84 123 171 302 419 592 743 960 1225 1443 1706 2136 2789 3202 90

Co-authors

Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonPostdoctoral Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Jovana MaksimovicPostdoctoral Researcher, Peter MacCallum Cancer CentreVerified email at petermac.org
Matthew D YoungWellcome Sanger InstituteVerified email at sanger.ac.uk
Matthew WakefieldWalter & Eliza Hall Institute; Dept of Obstetrics and Gynaecology, Univ of MelbourneVerified email at wehi.edu.au
Mark D. RobinsonAssociate Professor of Statistical Genomics, University of ZurichVerified email at imls.uzh.ch
Luke ZappiaHelmholtz Zentrum München/Technische Universität MünchenVerified email at helmholtz-muenchen.de
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
Kynan LawlorMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Lavinia GordonUniversity of MelbourneVerified email at unimelb.edu.au
Matthew WhitingCSIRO Astronomy & Space ScienceVerified email at csiro.au
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteVerified email at wehi.edu.au
Alexander N CombesMonash Biomedicine Discovery Institute, Department of Anatomy and Developmental Biology, MonashVerified email at monash.edu
Rachel WebsterUniversity of MelbourneVerified email at unimelb.edu.au
richard safferyVerified email at mcri.edu.au
Craig SmithAssociate Professor of Biology, Monash UniversityVerified email at monash.edu
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Katie AyersMurdoch Childrens Research InstituteVerified email at mcri.edu.au
Terence P SpeedThe Walter & Eliza Hall InstituteVerified email at wehi.edu.au
Harriet DashnowUniversity of UtahVerified email at genetics.utah.edu

Alicia Oshlack

Peter MacCallum Cancer Centre

Verified email at petermac.org - Homepage

Bioinformatics RNA-seq scRNA-seq Cancer clinical genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A scaling normalization method for differential expression analysis of RNA-seq data MD Robinson, A Oshlack Genome biology 11 (3), 1-9, 2010	4464	2010
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome biology 11 (2), R14, 2010	3221	2010
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1011	2007
From RNA-seq reads to differential expression results A Oshlack, MD Robinson, MD Young Genome biology 11 (12), 220, 2010	764	2010
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips J Maksimovic, L Gordon, A Oshlack Genome biology 13 (6), R44, 2012	633	2012
Transcript length bias in RNA-seq data confounds systems biology A Oshlack, MJ Wakefield Biology direct 4 (1), 14, 2009	543	2009
Expression profiling in primates reveals a rapid evolution of human transcription factors Y Gilad, A Oshlack, GK Smyth, TP Speed, KP White Nature 440 (7081), 242-245, 2006	351	2006
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes NM Davidson, A Oshlack Genome biology 15 (7), 1-14, 2014	273	2014
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity MD Young, TA Willson, MJ Wakefield, E Trounson, DJ Hilton, ME Blewitt, ... Nucleic acids research 39 (17), 7415-7427, 2011	262	2011
Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis SF Berkovic, LM Dibbens, A Oshlack, JD Silver, M Katerelos, DF Vears, ... The American Journal of Human Genetics 82 (3), 673-684, 2008	252	2008
missMethyl: an R package for analyzing data from Illumina’s HumanMethylation450 platform B Phipson, J Maksimovic, A Oshlack Bioinformatics 32 (2), 286-288, 2016	237	2016
Splatter: simulation of single-cell RNA sequencing data L Zappia, B Phipson, A Oshlack Genome biology 18 (1), 1-15, 2017	233	2017
A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders Z Stark, TY Tan, B Chong, GR Brett, P Yap, M Walsh, A Yeung, H Peters, ... Genetics in Medicine 18 (11), 1090-1096, 2016	225	2016
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips W Shi, A Oshlack, GK Smyth Nucleic acids research 38 (22), e204-e204, 2010	207	2010
Natural selection on gene expression Y Gilad, A Oshlack, SA Rifkin TRENDS in Genetics 22 (8), 456-461, 2006	204	2006
Diagnostic impact and cost-effectiveness of whole-exome sequencing for ambulant children with suspected monogenic conditions TY Tan, OJ Dillon, Z Stark, D Schofield, K Alam, R Shrestha, B Chong, ... JAMA pediatrics 171 (9), 855-862, 2017	162	2017
Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort S Eggers, S Sadedin, JA Van Den Bergen, G Robevska, T Ohnesorg, ... Genome biology 17 (1), 1-21, 2016	157	2016
Gene regulation in primates evolves under tissue-specific selection pressures R Blekhman, A Oshlack, AE Chabot, GK Smyth, Y Gilad PLoS Genet 4 (11), e1000271, 2008	155	2008
Bpipe: a tool for running and managing bioinformatics pipelines SP Sadedin, B Pope, A Oshlack Bioinformatics 28 (11), 1525-1526, 2012	143	2012
Identification of recurrent FGFR3 fusion genes in lung cancer through kinome‐centred RNA sequencing IJ Majewski, L Mittempergher, NM Davidson, A Bosma, SM Willems, ... The Journal of pathology 230 (3), 270-276, 2013	123	2013

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