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Brian Haas
Brian Haas
Broad Institute
Verified email at broadinstitute.org - Homepage
Title
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Year
Full-length transcriptome assembly from RNA-Seq data without a reference genome
MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ...
Nature biotechnology 29 (7), 644-652, 2011
180042011
UCHIME improves sensitivity and speed of chimera detection
RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight
Bioinformatics 27 (16), 2194-2200, 2011
148162011
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul, HL Koo, J Jenkins, M Rizzo, T Rooney, LJ Tallon, T Feldblyum, ...
Nature 408 (6814), 796-815, 2000
112912000
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
10726*2012
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
81832013
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ...
Genome research 21 (3), 494-504, 2011
35662011
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ...
Genome Biol 9 (1), R7, 2008
29202008
Next-generation characterization of the cancer cell line encyclopedia
M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ...
Nature 569 (7757), 503-508, 2019
27572019
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
Nature 486, 215-221, 2012
2487*2012
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data
MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ...
Nature biotechnology 29 (7), 644, 2011
22672011
The genome of the African trypanosome Trypanosoma brucei
M Berriman, E Ghedin, C Hertz-Fowler, G Blandin, H Renauld, ...
Science 309 (5733), 416-422, 2005
20262005
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas, AL Delcher, SM Mount, JR Wortman, RK Smith Jr, LI Hannick, ...
Nucleic acids research 31 (19), 5654-5666, 2003
19392003
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
NM El-Sayed, PJ Myler, DC Bartholomeu, D Nilsson, G Aggarwal, ...
Science Signalling 309 (5733), 409, 2005
18022005
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
BJ Haas, S Kamoun, MC Zody, RHY Jiang, RE Handsaker, LM Cano, ...
Nature 461 (7262), 393-398, 2009
17232009
Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 439 (7075), 502-502, 2006
1685*2006
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
16852005
Genome sequence of Aedes aegypti, a major arbovirus vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ...
Science Signalling 316 (5832), 1718, 2007
13582007
The TIGR rice genome annotation resource: improvements and new features
S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ...
Nucleic acids research 35 (suppl 1), D883-D887, 2007
13132007
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Nature 452 (7190), 991-996, 2008
12682008
The draft genome of the transgenic tropical fruit tree papaya
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Carica papaya, 991-996, 2008
1268*2008
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