Samuel A Isaacson
Samuel A Isaacson
Boston University, Department of Mathematics and Statistics
Verified email at math.bu.edu - Homepage
Title
Cited by
Cited by
Year
Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations
SA Isaacson, CS Peskin
SIAM Journal on Scientific Computing 28 (1), 47-74, 2006
1732006
The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target
SA Isaacson
SIAM Journal on Applied Mathematics 70 (1), 77-111, 2009
1552009
A convergent reaction-diffusion master equation
SA Isaacson
Journal of Chemical Physics 139 (5), 054101 (12pp), 2013
892013
Relationship between the reaction–diffusion master equation and particle tracking models
SA Isaacson
Journal of Physics A: Mathematical and Theoretical 41 (6), 065003, 2008
502008
The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion
SA Isaacson, DM McQueen, CS Peskin
Proceedings of the National Academy of Sciences 108 (9), 3815-3820, 2011
452011
Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials
SA Isaacson, D Isaacson
Physical Review E 80 (6), 066106, 2009
452009
Imaging and characterizing cells using tomography
M Do, SA Isaacson, G McDermott, MA Le Gros, CA Larabell
Archives of biochemistry and biophysics 581, 111-121, 2015
332015
A comparison of bimolecular reaction models for stochastic reaction–diffusion systems
IC Agbanusi, SA Isaacson
Bulletin of mathematical biology 76 (4), 922-946, 2014
282014
Uniform asymptotic approximation of diffusion to a small target
SA Isaacson, J Newby
Physical Review E 88 (1), 012820 (13pp), 2013
242013
Numerical solution of linear Volterra integral equations of the second kind with sharp gradients
SA Isaacson, RM Kirby
Journal of computational and applied mathematics 235 (14), 4283-4301, 2011
212011
A first-passage kinetic Monte Carlo method for reaction–drift–diffusion processes
AJ Mauro, JK Sigurdsson, J Shrake, PJ Atzberger, SA Isaacson
Journal of Computational Physics 259, 536-567, 2014
192014
Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1
J Goyette, CS Salas, N Coker-Gordon, M Bridge, SA Isaacson, J Allard, ...
Science advances 3 (3), e1601692, 2017
172017
The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites
SA Isaacson, CA Larabell, MA Le Gros, DM McQueen, CS Peskin
Bulletin of mathematical biology 75 (11), 2093-2117, 2013
172013
An unstructured mesh convergent reaction–diffusion master equation for reversible reactions
SA Isaacson, Y Zhang
Journal of Computational Physics 374, 954-983, 2018
132018
Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
SJ Chapman, R Erban, SA Isaacson
SIAM Journal on Applied Mathematics 76 (1), 368-390, 2016
132016
A microfluidic pumping mechanism driven by non-equilibrium osmotic effects
PJ Atzberger, S Isaacson, CS Peskin
Physica D: Nonlinear Phenomena 238 (14), 1168-1179, 2009
122009
The influence of molecular reach and diffusivity on the efficacy of membrane-confined reactions
Y Zhang, L Clemens, J Goyette, J Allard, O Dushek, SA Isaacson
Biophysical journal 117 (7), 1189-1201, 2019
62019
Modeling genetic circuit behavior in transiently transfected mammalian cells
J Wang, SA Isaacson, C Belta
ACS synthetic biology 8 (4), 697-707, 2019
62019
Uniform asymptotic approximation of diffusion to a small target: Generalized reaction models
SA Isaacson, AJ Mauro, J Newby
Physical Review E 94 (4), 042414, 2016
62016
Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus
J Ma, M Do, MA Le Gros, CS Peskin, CA Larabell, Y Mori, SA Isaacson
PLoS computational biology 16 (11), e1008356, 2020
42020
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